Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq16 118 9e-22 seq40 116 3e-21 seq12 104 2e-17 seq22 96.9 3e-15 seq148 89.7 4e-13 seq126 84.2 2e-11 >seq16 Length=31725842 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || ||||||||||| | || | || ||||| ||||||||||||||||| Sbjct 21647024 ACCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGA 21647083 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || || || || ||||| |||| || | |||||||| ||||| Sbjct 21647084 CAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || ||| || | ||| | ||||| | | || || Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || || ||||||||||||||||||||||| Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq40 Length=22651954 Score = 116 bits (128), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | ||||||||| | |||||||| || | ||| || |||||| Sbjct 7366503 CACTAGGTGCAGGGTAGACTCT----GGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTC 7366558 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || ||||||||||||||| Sbjct 7366559 CAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 7366618 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| |||||| || ||| ||||||| ||| | || || Sbjct 7366619 GATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTT 7366678 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 7366679 GCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq12 Length=34595640 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| | ||| | ||||||||||| || | |||||| || | ||| | |||| Sbjct 22518580 AACACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCATCC 22518521 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || |||||| | || || | || ||||||||||| || || || ||||||||||||||| Sbjct 22518520 TCCAGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 22518461 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| | | || | | || |||||| || ||| ||||||| ||| | || Sbjct 22518460 TGGATTTTGGCTCTGACATTCTTGATGGTGTCACTGAGCTCCACCTCGAGGGTGATGGTC 22518401 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| | | || || |||||||| Sbjct 22518400 TTGCCCGTCAGGATCCTCACGAAGATCTGCAT 22518369 >seq22 Length=29172479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| | |||||||| || | || | |||||| Sbjct 11894362 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCCTC 11894421 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| | || | || ||||||||||| || || || ||||||||||||||| Sbjct 11894422 CAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 11894481 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | | | |||||| || ||| ||||||| ||| | | || Sbjct 11894482 GATTTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGCCTT 11894541 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATTACTCG 118756 ||| ||||| || || | || |||||||| || ||| |||||| Sbjct 11894542 GCCCGTCAGGGTCTTCAGGAAGATCTGCATCTCTGCATCTGCTACTCG 11894589 >seq148 Length=4887613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || |||||||| || | |||||| ||| || Sbjct 4050792 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 4050851 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | |||||| || ||||| ||||| || || || Sbjct 4050852 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4050911 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || || || || || | ||| | || ||| Sbjct 4050912 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTG 4050971 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||| ||||| Sbjct 4050972 CCAGTCAGGGTCTTCACGAAAATTTGCAT 4051000 >seq126 Length=6421402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 ||||| ||||||||||||||||| || ||| || || || || || || ||||| Sbjct 2409845 GACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTGCTTACCAGCA 2409904 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 |||| || | |||||||| ||||| || || ||||| || || || ||| || Sbjct 2409905 AAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACA 2409964 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | ||| | ||||| | | || |||| | || | || || || || || |||||| Sbjct 2409965 TTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTT 2410024 Query 118725 ACAAAAATCTGCAT 118738 || ||||||||||| Sbjct 2410025 ACGAAAATCTGCAT 2410038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433808039974468