Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002321.1 Length=41401 Score E Sequences producing significant alignments: (Bits) Value seq371 188 2e-43 >seq371 Length=40469 Score = 188 bits (208), Expect = 2e-43 Identities = 264/371 (71%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 11720 TATCATTGGTAAAATTAAAGATCATATCGGTGGTATGGTAGACGCTGTTAAAAGAGGTCT 11779 ||| |||| ||||||||| ||| || ||| |||||||| || ||||| || || Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 11780 TAATAAATTAATTGAAGGTTTAAACTGGGTCGGTGGTAAGTTGGGTATGGACAAAATACC 11839 || ||| | || |||||| | |||||||| | || || | || ||||||||| |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 11840 GAA------GTTACACACTGGTACTGAACATACGCATACTACTACAAGATTAGTTAAGAA 11893 || ||||||||| |||||||||||||| |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 11894 CGGTAAGATTGCGCGGGATACGTTCGCTACGGTTGGGGATAAAGGACGTGGAAATGGTCC 11953 |||||||||||| || || ||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 11954 GAATGGTTTCAGAAATGAAATGATTGAATTCCCTAATGGCAAACGGGTACTTAGGCCTAA 12013 ||||||| || ||||||||||| | || || || ||| | | | | ||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 12014 TACAGATACGACAGCGTACTTACCTAAAGGTTCAATAGTATATAACGGCGCACAAACTTA 12073 | |||||| ||||| || | || ||||||| | || || || ||||| || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 12074 TTCAATGTTAA 12084 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 12178 GTAAAGGTACAAAGTGGCTTGGCGATAAAGTTGGTGATGTCATGGACTTTATCGATAATC 12237 ||||||||| | | |||||||||||||| ||||| ||||| | || | || ||||| | Sbjct 28067 GTAAAGGTAAAGACTGGCTTGGCGATAAGGTTGGAGATGTGCTTGATTGGATAGATAAAC 28008 Query 12238 CAGGCAAACTTTTAAATTATGTACTTCAAGCGTTTGGAGT 12277 | || ||| | |||||| | ||| | ||||||||||||| Sbjct 28007 CGGGTAAATTGTTAAATAAGGTATTAGAAGCGTTTGGAGT 27968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132354952883174