Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq148 114 1e-20 seq40 109 6e-19 seq18 100 3e-16 seq97 98.7 1e-15 seq57 98.7 1e-15 seq27 98.7 1e-15 seq21 98.7 1e-15 seq16 96.9 4e-15 seq15 95.1 1e-14 seq39 91.5 2e-13 seq117 89.7 6e-13 seq22 89.7 6e-13 seq85 86.0 7e-12 seq12 82.4 9e-11 >seq148 Length=4887613 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | |||| |||| |||| ||| ||| || || ||||||||||||| Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| ||| || || | || | | || || || | |||||| Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| ||||| || || ||||| |||||||| |||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | || | |||| |||| || ||| || || || ||||| |||| Sbjct 4050773 TCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 4050832 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || ||||| || || || || ||||| | ||||||||| | || Sbjct 4050833 AAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 4050892 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || || ||| ||| || || | || | | || || || | |||||| Sbjct 4050893 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCAC 4050952 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || ||||| || || ||||||||||| || Sbjct 4050953 TTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTGAC 4051006 >seq40 Length=22651954 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 || || ||||| |||| ||||| || | || || ||||| || || || ||||| || Sbjct 7366524 TGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGA 7366583 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 ||||||||||| | || | || ||||||||| |||||| ||||| || | | Sbjct 7366584 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATG 7366643 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 ||||| || | ||||| |||| |||||||| ||||| || || ||||| || ||||| Sbjct 7366644 GTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATC 7366703 Query 43179 TGCAT 43183 ||||| Sbjct 7366704 TGCAT 7366708 >seq18 Length=28467743 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24050708 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24050767 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 24050768 TACTAACGAGGAT 24050780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| |||||||||||||||| |||| |||||||||||| Sbjct 24047148 TCTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTCACCACT 24047207 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 24047208 ATACTAACGAGGA 24047220 >seq97 Length=8736462 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3667 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3608 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3607 TACTAACGAGGA 3596 >seq57 Length=14644473 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10788492 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10788551 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10788552 TACTAACGAGGA 10788563 >seq27 Length=25514964 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24302478 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24302419 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 24302418 TACTAACGAGGA 24302407 >seq21 Length=28505965 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11274126 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11274185 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11274186 TACTAACGAGGA 11274197 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9048552 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9048611 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9048612 TACTAACGAGGA 9048623 >seq16 Length=31725842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| |||||||||||| |||||||||| || ||| | | || Sbjct 21647039 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATC 21647098 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||||||||| || || || | ||||| || | || | | ||||| || Sbjct 21647099 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 21647158 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || ||| | | | | ||||| | ||| || |||| ||||||||| Sbjct 21647159 CTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 21647218 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || |||||||| || ||||| || Sbjct 21647219 CTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq15 Length=34776858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | | | | ||||| ||||| ||| |||||| || || |||| |||| | Sbjct 23700267 CCTCCCCTCAGATGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGCTGTAGTCAGAC 23700326 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| | || || || || | |||||||| || || Sbjct 23700327 AGGGTGCGTCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTTGGGGGG- 23700385 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | |||||||||||| ||| || |||| || | || || || | ||| || Sbjct 23700386 ATGCTCTCCTTGTCTTGGATCTTGGCCTTGACATTCTGAATGGTTTCACTGGGTTCTACT 23700445 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||| | ||||| || || ||||| | ||||||||||| Sbjct 23700446 TCGAGGGTGATGATGTTGCCAGTAAGGGTCTTCATGAAGATTTGCAT 23700492 >seq39 Length=21454635 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 17474579 GGGAATCAAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAATGAG 17474520 Query 60136 GAT 60138 ||| Sbjct 17474519 GAT 17474517 >seq117 Length=6347111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| ||||| ||||| |||| ||||| | | || || |||||| Sbjct 1554184 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGC 1554125 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || | || ||||| | ||| ||||| | || | || || || ||| ||| || Sbjct 1554124 TTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 1554065 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | || || || | |||||| || | |||||||| ||||| || Sbjct 1554064 GCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTC 1554005 Query 43161 AGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || ||||| | |||||||||||||| || Sbjct 1554004 AGGGTCTTCATGAAGATTTGCATTTTGAC 1553976 >seq22 Length=29172479 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAG-TCCGCTCGTCAT 43032 ||||| |||| ||| ||| || | || ||||| |||| |||| || || | || | Sbjct 11894362 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGC-CATCCT 11894420 Query 43033 CTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 43092 | ||||| || | || ||||| || ||||||||||| | || | || ||||||||| Sbjct 11894421 CCAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTT 11894480 Query 43093 TGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 |||||| ||||| || ||||| || | ||||| |||| ||||||| | Sbjct 11894481 GGATTTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGCCT 11894540 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| | ||||| ||||| Sbjct 11894541 TGCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq85 Length=11339561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | ||||| |||| ||| |||||| || || ||||| || | | Sbjct 11133857 CCTCCCCTCAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 11133916 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || || |||||||| | ||| || || || | ||||||||| | || Sbjct 11133917 AGGGTGCATCCATCTTCCAGCTGCTTGCTAGCAAAGATCAGCCTCTGCTGGTCAGTGGGG 11133976 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || | ||||||| ||| || || | || | ||||| || | ||| || Sbjct 11133977 ATGCCCGCCTTGTCTTGGATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGTTCAACC 11134036 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||||| ||||| || || ||||| | ||||||||||| Sbjct 11134037 TTGAGGATGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATTTGCAT 11134083 >seq12 Length=34595640 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || ||||| | |||| || ||| || || | ||||| |||| ||||| | | Sbjct 22518583 CGAAACACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCA 22518524 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| | || || ||||| || ||||||||||| | || | || ||||||| Sbjct 22518523 TCCTCCAGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 22518464 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || |||||| | ||| || | ||||| || ||||| |||| |||||| Sbjct 22518463 TCTTGGATTTTGGCTCTGACATTCTTGATGGTGTCACTGAGCTCCACCTCGAGGGTGATG 22518404 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || || | || ||||| ||||| Sbjct 22518403 GTCTTGCCCGTCAGGATCCTCACGAAGATCTGCAT 22518369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571787372292120