Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq371 260 4e-65 >seq371 Length=40469 Score = 260 bits (288), Expect = 4e-65 Identities = 333/453 (74%), Gaps = 22/453 (5%) Strand=Plus/Minus Query 11438 ATATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAACGCTAAGAAAGTTGAGT 11493 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 11494 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 11549 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 11550 -AGTAAT-ATGAATGGCATTAATTATGATCATATCGAAATACAACCGAAATTTGAATTAT 11607 | |||| || |||| |||||| ||||||| |||||||||| || ||| || Sbjct 658 GATTAATTATAGATGG------TTATGACTATATCGAGATACAACCGAGATATGAGCTAA 605 Query 11608 TACCAAAATTAGATAAACAACGAAAGATTGAATATATTGCAGACTTCGCGTTAT---ATC 11664 |||| ||||| | ||||||||| || | |||||||||||||||||| || ||| || Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 11665 TCGATGGCAAACTGATTGAAGTTATCGACATTAAAGGTATGCCAACTGAAGTAGCAAAAC 11724 ||| ||| |||||||||| || ||| ||||||| ||| | || ||| || || Sbjct 544 ACGA---CAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGT 488 Query 11725 TTAAAGCAAAGATTTTTAGACATAAATACAGAAACATAAAACTCAATTGGATATGTAAAG 11784 | || || ||| | |||||| || ||| || ||||||| | |||||||||||||| Sbjct 487 TAAAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAG 428 Query 11785 CACCTAAGTATACAGGCAAAACATGGATTACGTATGAGGAATTAATTAAAGCAAGACGAG 11844 |||||||||| ||||| ||| ||| | |||||||| ||||| | || | ||||| | Sbjct 427 CACCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCG 368 Query 11845 AACGCAAAAGAGAAATGAAGTGATTTAATGCAA 11877 ||||||| | || | || |||||| ||| || Sbjct 367 AACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 197 bits (218), Expect = 4e-46 Identities = 266/371 (72%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 30402 TATCATTGGTAAAATTAAAGATCATATCGGTGGTATGGTAGACGCTGTTAAAAGAGGTCT 30461 ||| |||| ||||||||| ||| || ||| |||||||| || ||||| || || Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 30462 TAATAAATTAATTGAAGGTTTAAACTGGGTCGGTGGTAAGTTGGGTATGGACAAAATACC 30521 || ||| | || |||||| | |||||||| | || || | || ||||||||| |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 30522 GAA------GTTACACACTGGTACTGAACATACGCATACTACTACAAGATTAGTTAAGAA 30575 || ||||||||| |||||||||||||| |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 30576 CGGTAAGATTGCGCGGGATACGTTCGCTACGGTTGGGGATAAAGGACGTGGAAATGGTCC 30635 |||||||||||| || || ||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 30636 GAATGGTTTCAGAAATGAAATGATTGAATTCCCTAATGGCAAACGTGTACTTACGCCTAA 30695 ||||||| || ||||||||||| | || || || ||| || | | || ||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 30696 TACAGATACGACAGCGTACTTACCTAAAGGTTCAAAAGTATATAACGGCGCACAAACTTA 30755 | |||||| ||||| || | || ||||||| | || || || ||||| || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 30756 TTCAATGTTAA 30766 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 194 bits (214), Expect = 5e-45 Identities = 468/700 (67%), Gaps = 15/700 (2%) Strand=Plus/Minus Query 8775 GATGATGACCTCCCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCAC 8834 ||||| || | ||||||| | || |||||| ||| | |||| | | || ||| Sbjct 4126 GATGACGATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCA 4069 Query 8835 TCAAGACGACGGCACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGCAATAAAGAAAC 8894 ||| | || ||||||| ||| | ||||| |||||| | | || ||||| Sbjct 4068 ACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTT 4009 Query 8895 ATTACTACTTGATAACGGATTTGATGTGGAAGTAGATGTAAACGTTATAGATCCGTTTCA 8954 |||||||||||||||||||| || || ||| ||||| || | || || | | Sbjct 4008 TTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAA 3949 Query 8955 AATTACTGGACAACAACGTAAATTGATATTCGCA-TTGTGTAACGATATAGAAGCTCATA 9013 ||| |||| | ||||||| | ||||||| ||||| ||||||||||||||||||| Sbjct 3948 AATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTG-AACGATATAGAAGCTCATA 3890 Query 9014 CAGGACAGCCTCGAGATTATATGAGACAAATGTTCCAAGATTATGTGAAGTTT-CTGTAT 9072 |||| ||| | |||||||||||| | | |||||||| ||||| | || | || || Sbjct 3889 CAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGT-ACGTGTGCTATAC 3831 Query 9073 GGCTATGAAGAACGCATATCTTTATCAAATTGTTCTCGAACTATAGCTAAGCAAATTATA 9132 ||||| || || |||||||| | | |||||||| | | | || | ||||||||| Sbjct 3830 GGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATA 3771 Query 9133 GA---AGCGATGTTTGAGTGGATTTTTACAAATGCGATTCCATTAAATTATAAAACAAGC 9189 || ||| | |||| ||||| || || || || | | ||||||||||| Sbjct 3770 GATGTAGCAA---TTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGT 3714 Query 9190 AAATTGATGAAAGAAGATAAAAATTATCTTTATTGGGCAACTGTTACGCGTCATTGCATT 9249 | | || || | || | || | | | || ||| ||| | | | | | ||| || Sbjct 3713 GATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTT 3654 Query 9250 ATATGCGGAAAGCCTCACGCTGACCTAGCGCATTATGAAGCAGTCGGCAGAGGCATGAAC 9309 || || || ||| || || || ||||| |||||| ||||||| || | || ||| Sbjct 3653 ATCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAAC 3597 Query 9310 AGAAATAAGATGAATCACTATGACAAACATGTATTAGCGTTATGTCGCGAACATCATAAC 9369 ||| ||||| | || | | |||| | ||||||| ||||| | |||||||| Sbjct 3596 AGACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAA 3537 Query 9370 CAGCAACACGCGATGGGCGTTAAGTCATTTGATGATAAATATCAATTGCATGACTCGTGG 9429 ||||||||| |||||| | | || || | || ||||| || | | || ||| Sbjct 3536 GAGCAACACGACATGGGCATGGATAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGG 3477 Query 9430 ATAAAAGTTGATGAGAGGCTCAACGAAATGCTGAAAGGAG 9469 | | ||||| ||||| || ||| ||||||||||||||| Sbjct 3476 GTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAG 3437 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 30860 GTAAAGGTACAAAGTGGCTTGGCGATAAAGTTGGTGATGTCATGGACTTTATCGATAATC 30919 ||||||||| | | |||||||||||||| ||||| ||||| | || | || ||||| | Sbjct 28067 GTAAAGGTAAAGACTGGCTTGGCGATAAGGTTGGAGATGTGCTTGATTGGATAGATAAAC 28008 Query 30920 CAGGCAAACTTTTAAATTATGTACTTCAAGCGTTTGGAGT 30959 | || ||| | |||||| | ||| | ||||||||||||| Sbjct 28007 CGGGTAAATTGTTAAATAAGGTATTAGAAGCGTTTGGAGT 27968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145906272310204