Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq148 116 2e-21 seq40 91.5 1e-13 seq15 91.5 1e-13 seq82 89.7 3e-13 seq117 86.0 4e-12 >seq148 Length=4887613 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| || ||||| || || Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||||||| || ||||||| |||||||||| || Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||||| || | || | ||| | | ||| || Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||||||||||||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050772 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| || |||||||| || || ||| | || Sbjct 4050333 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 4050392 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| ||||| || ||||||| ||||||||| || | || || || || Sbjct 4050393 TCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 4050452 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 4050453 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTC 4050512 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 4050513 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATC 4050545 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | || |||||||| | |||| |||||||| ||||||||||| || Sbjct 4050773 TCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 4050832 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||| |||||||| || ||||||| ||||||||| || Sbjct 4050833 AAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 4050892 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || || || ||||| ||| | || | || | ||| | | ||| || Sbjct 4050893 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCAC 4050952 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||| || || ||||| Sbjct 4050953 TTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 4051000 >seq40 Length=22651954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34203 TCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGA 34262 |||| ||||||||||| || || ||| | || |||| ||| ||||| || || || | Sbjct 7366522 TCTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCA 7366581 Query 34263 GCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCT 34321 | ||||||||||| ||| | || ||||||||| || ||| ||||| | || | Sbjct 7366582 GACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCG 7366640 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | || | | || || || | |||||||| ||||| || || || ||||| ||| Sbjct 7366641 ATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAG 7366700 Query 34382 ATCTGCATCGCT 34393 ||||||||| || Sbjct 7366701 ATCTGCATCTCT 7366712 >seq15 Length=34776858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| || || || ||||| ||| ||||||| ||||| || | || Sbjct 23700282 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGCTGTAGTCAGACAGGGTGCGTCCATCT 23700341 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||| || || || |||| |||||||| | ||| | |||||||||||| Sbjct 23700342 TCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTTG-GGGGGATGCTCTCCTTGTCT 23700400 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || || | || | | ||| || || | |||||| | Sbjct 23700401 TGGATCTTGGCCTTGACATTCTGAATGGTTTCACTGGGTTCTACTTCGAGGGTGATGATG 23700460 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||| || || || |||| ||||| |||||| ||| Sbjct 23700461 TTGCCAGTAAGGGTCTTCATGAAGATTTGCATCCCTC 23700497 >seq82 Length=11338420 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||||| || || ||||| |||||||||| |||| | | || || Sbjct 1447546 AGCACCAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTTGGACGGGGTGTGTTCATCT 1447487 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| ||||||||||| || || |||| ||||||||| || | | ||||||||| Sbjct 1447486 TCCAATTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGAGATGGCCTCCTTGTCT 1447427 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | | || | | ||| |||| | |||||||| Sbjct 1447426 TGGATCTTGGCCTTCATATTCTCAGTGGTGTCACTGGGTTCACCGTCGAGGGTGATGGTC 1447367 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | || ||||| || |||| ||||| |||||| ||| Sbjct 1447366 TGACCCGTGAGGGTCTTCATGAAGATTTGCATCCCTC 1447330 >seq117 Length=6347111 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| || || || | || Sbjct 1554193 AGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCT 1554134 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||||| || ||||||| ||| ||||| || | || || || || Sbjct 1554133 TCCAGCTGCTTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCC 1554074 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | || | ||| | | ||| || |||| |||||||| Sbjct 1554073 TGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTC 1554014 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || |||| ||||| ||||| Sbjct 1554013 TTGCCAGTCAGGGTCTTCATGAAGATTTGCAT 1553982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323055348566240