Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq48 208 7e-49 seq136 98.7 9e-16 seq34 95.1 1e-14 >seq48 Length=20532749 Score = 208 bits (230), Expect = 7e-49 Identities = 582/885 (66%), Gaps = 30/885 (3%) Strand=Plus/Minus Query 15882 AACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACA 15941 || |||| ||||| ||| | || | ||||||||||| | | || |||||||| | Sbjct 14858739 AAGTTTACAAATCTGCATCCAAAGTGATGACATTATCTTTGCTTTCTGCCATAACTGTGA 14858680 Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 | |||||| || |||| || ||||||||||||||||| |||||||| ||||||| Sbjct 14858679 AATGTTGATACTCTGGCACTCATTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATAT 14858620 Query 16002 TTTCCATAAAATCAAAAGGATTTT----TTGAACAATAGTATTTATCGCATCCCAATTCC 16057 ||||||||||||| || ||||||| |||| || || | |||| | |||| Sbjct 14858619 TTTCCATAAAATCGAAGGGATTTTCTCCCTGAAAAA----CCTTTGAGAATCCAAGTTCC 14858564 Query 16058 AACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCT 16117 | || ||||| ||| ||||||| || |||||||| ||||| ||| |||||||||| | Sbjct 14858563 ACCAGCAATCTGTCCACCACAAACTCAATATACTGCTTCATCAAAACACAGTTCATCCTG 14858504 Query 16118 ATTA-ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAAT 16176 || | | || | | | |||||||| ||||| | | || || | || || || || Sbjct 14858503 ATCAGACCGAATA-GCAGGGCTTCTGTCAAAAACTCCTACTCGATTCTGACAGCATCTAT 14858445 Query 16177 GATTATATCTCTTACTACACTATTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||| || || || || | | | | ||| | ||| | | ||||| | | Sbjct 14858444 GATGATCTC-CTGGACCCAGTCCTCCTCATGCTTGTTCATTAAATACTGGAACATCAGGC 14858386 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| ||||| || ||||| || || || || | || || || || | Sbjct 14858385 AGGCAAATTCACAGTGAAATCCCTCATCTCTGCTGA----------GGAGAAGGTGAGGC 14858336 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 ||||||| || |||| || || | ||| || || || |||| || || | ||||| | Sbjct 14858335 CTGGCATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAAGAACA 14858276 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 ||||| ||||| || || || ||| | ||| | | | | ||| | | ||| Sbjct 14858275 CTCCTTCCACTGCTGCGAAGGCCACCTCCCTCTCCCTGAAAGCAGACTTTCTGTCTGCTA 14858216 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 |||| ||||| | |||||||| |||||| | | ||| | || ||| |||||| Sbjct 14858215 TCCACCGCAAGGCCCAGTCTGCTTTTTTCTTAACATATTCCATTGTTTCAATTCCATTAA 14858156 Query 16476 ATAAATAAtt--tttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 ||||| |||| | ||| | | ||| || |||||||| || || ||||| | Sbjct 14858155 ATAAA-AATTCCCTCTTC-TCGAAGTCTCTGAT----GTATCTATGAGCAAGCTATATGT 14858102 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 || | |||| |||| || ||||| || || || ||||| | || ||| | | Sbjct 14858101 CTCATAGTGAACGTTCTTGATGAGGATCTGGAAGCCGTAGAAGCAGCAAGGTTCAGGGAC 14858042 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 || ||||| | || ||| | || |||| || || |||||||| || ||||| Sbjct 14858041 CTGCACTTCCTGGCTGAAGTGCTCTACCAAATTTTTATTTACAATTCCATCACTGGCTGC 14857982 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||||| || | ||||| ||||||| || || | | || || ||||| Sbjct 14857981 AAAAACGGCTAAGATGTGAGAGATAAAATACTTCTCATCGGGTTTGAGCTTGTTCCAGTG 14857922 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || | ||| ||||||| || ||||||||| | |||||||| || Sbjct 14857921 AGGCAGATCCTTTGATAGGTCAACCTCTTCTGCTGTCCAAAAGGA 14857877 >seq136 Length=5168023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||||| ||||| || || || ||||||||||| ||||| || Sbjct 4986660 TCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCTTG 4986719 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || | ||||| ||||| |||||||| || ||||| || || ||||| || Sbjct 4986720 AGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGGCG 4986779 Query 16379 ACCAATCGCTCACC 16392 |||| ||||| || Sbjct 4986780 ACCACACGCTCTCC 4986793 >seq34 Length=23970518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 15882 AACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACA 15941 || |||||||||| ||| | || || ||||||||| | | | || |||||||| | Sbjct 19366284 AAGTTTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCGA 19366343 Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||| || |||| || ||||||||||| ||||| |||||||| ||||| | Sbjct 19366344 AACGCTGATACTCTGATACTCGTTTCTCAAAGAAATTCGTTTTCCCTTCTAAAGAAATGT 19366403 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTG 16028 ||||||| ||||| || ||||||| || Sbjct 19366404 TTTCCATGAAATCGAAGGGATTTTCTG 19366430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462487550459400