Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002661.2 Length=42942 Score E Sequences producing significant alignments: (Bits) Value seq371 307 3e-79 >seq371 Length=40469 Score = 307 bits (340), Expect = 3e-79 Identities = 535/768 (70%), Gaps = 15/768 (2%) Strand=Plus/Minus Query 9092 ACAGAATAGACAGCAA---TCAAATAATCCATTTGCTAATGCTAATGGT---CCTATAGA 9145 ||| | || ||||||| || | ||||| ||| ||||||||| ||| || || || Sbjct 4193 ACAAACTAAACAGCAAGCGTCTGAGAATCCTTTTAATAATGCTAACGGTGGACCAATTGA 4134 Query 9146 AATCTCTGACGATGATTTACCTTTCTAGGACGTGATTAAATGGCTCAAATCAAAAACTAT 9205 || || || |||||||| ||||| | ||||||| ||||| ||| |||||||| Sbjct 4133 TATTCAAGATGACGATTTACCGTTCTAAGGTGTGATTATATGGCGGTAATAAAAAACTAC 4074 Query 9206 ATCACTCAAGATGACGGCACAACAACAGTCGTTATCGAGGGTGCCGAGCTAGGAGACAAA 9265 ||| ||| |||| ||||||| ||| | ||| || ||||||| || ||||| Sbjct 4073 ATCCAACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAA 4014 Query 9266 GAAACATTATTACTTGATAACGGCTACGAAGTCGAATGTGATTTGCGAATCGAAGACCCA 9325 || ||| ||||||||||||| | ||||| ||||| || | | ||| |||||| Sbjct 4013 GACTTTTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCA 3954 Query 9326 TTCAAAATAACAGACAAGCAACGAAGAAAAATATTTGCGCTCTGT-AACGACATAGAGAG 9384 | ||||||||| || |||||||| |||||| |||| || || ||| ||||| ||||| || Sbjct 3953 TACAAAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCT-TGTGAACGATATAGA-AG 3896 Query 9385 C-CACACAGGCCAACCACGTGACTATATGAGGTATTTGTTCCAAGAATATGTAACGGTTT 9443 | || |||||| |||| || ||||||||| || | ||||||||||||||| || Sbjct 3895 CTCATACAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGC 3836 Query 9444 TGTATGACTATGACAAGAGTATTTCGTTAAGTGACTGTACACGGATGCAAGCGAATCAAA 9503 | || | ||| || || | || || | ||| ||| | ||| || | ||||| Sbjct 3835 TATACGGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAA 3776 Query 9504 TTATCGAGGTAACACTCGATTGGATATTTCACAACGACATACCGCTTAGTTATAAAACAA 9563 |||| || ||| || | || |||||||| | ||| |||| ||||| || |||||||||| Sbjct 3775 TTATAGATGTAGCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAA 3716 Query 9564 GCGACTTGCTGAAACAAGATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTG 9623 | || | | || | || | | | || |||||| | | ||| | || | || || | Sbjct 3715 GTGATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCG 3656 Query 9624 TAATATGCGGAAAGCCTCACGCTGACCTAGCACATTATGAAGCAGTTGGCAGAGGCATGA 9683 | || || || ||| || || || |||||||||||| ||||||| || | || | Sbjct 3655 TTATCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCA 3599 Query 9684 ACAGAAATAAGATGAATCACTATGACAAACATGTATTAGCGTTATGTCGCGATCATCACA 9743 ||||| ||||| | || | | |||| | ||||||| ||||| | |||||| | Sbjct 3598 ACAGACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATA 3539 Query 9744 ACGAGCAACATGCGATTGGCGTTAAGTCGTTT-AATGATAAATACCACTTGCATGACTCG 9802 | |||||||| | || ||| | | | |||| ||| | || || || || | | || Sbjct 3538 AAGAGCAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCA 3480 Query 9803 TGGATAAAAGTTGATGAGAGGCTCAATAAAATGCTGAAAGGAGAGAAA 9850 ||| | | ||||| ||||| || || |||||||||||||||| |||| Sbjct 3479 TGGGTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 12/141 (9%) Strand=Plus/Minus Query 12301 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 12360 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 12361 AGTGTGAATATTACCAATATTTAGAA-----AGTAA-TATGAATGGCACTAACTATGATC 12414 | ||||| || ||| | || |||||| | ||| ||| |||| ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGG------TTATGACT 635 Query 12415 GTATCGAAATACAACCGAAAT 12435 |||||| |||||||||| || Sbjct 634 ATATCGAGATACAACCGAGAT 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137285905241392