Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq48 147 2e-30 seq26 143 3e-29 seq51 98.7 1e-15 seq136 96.9 3e-15 >seq48 Length=20532749 Score = 147 bits (162), Expect = 2e-30 Identities = 539/831 (65%), Gaps = 56/831 (7%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| || |||| ||| |||||||| || ||||| ||||| | || |||||||| Sbjct 14858675 TTGATACTCTGGCACTCATTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTC 14858616 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTA 14033 ||||||||| || |||||| | | ||| || || | | || || ||||| | || | Sbjct 14858615 CATAAAATCGAAGGGATTTTCTCCCTGAAAAACCTT-TGAGAATCCAAGTTCCACCAGCA 14858557 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 |||| ||| | | ||||||||||| || ||| ||| |||| ||||| | || || Sbjct 14858556 ATCTGTCCACCACAAACTCAATATACTGCTTCATCAAAACACAGTTCATCCTGATCAGAC 14858497 Query 14094 TTA----CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 | |||| || | || ||||| || | || || ||||| || ||| Sbjct 14858496 CGAATAGCAGGGCTTCT----GTCAAAAACTCCTACTCGATTCTGACAGCATC---TATG 14858444 Query 14150 ATAATC----GTAATAATT--TCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTA 14201 || ||| | | | | || | | | | || ||| || | || || | Sbjct 14858443 ATGATCTCCTGGACCCAGTCCTCCTCAT-----GCTTGTTCATTAAATACTGGAACATCA 14858389 Query 14202 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 14261 || ||||| ||||| |||| ||||||||||| || | || || || | Sbjct 14858388 GGCAGGCAAATTCACAGTGAAATCCCTCATCTCTGCTGA----------GGAGAAGGTGA 14858339 Query 14262 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 14321 |||||||| | |||| || || | ||| || || || | || || || | |||| Sbjct 14858338 GGCCTGGCATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAAGA 14858279 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC--AAACGATGCTTTTTTGTT 14379 | | ||| || ||||| || || || | || ||||| || | | ||| ||| Sbjct 14858278 ACACTCCTTCCACTGCTGCGAAGGCCA--CCTCCCTCTCCCTGAAAGCAGACTTTCTGTC 14858221 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | |||||| ||||| || | |||||| |||| | | |||||||||||||| | Sbjct 14858220 TGCTATCCACCGCAAGGCCCAGTCTGCTTTTTTCTTAACATATTCCATTGTTTCAATTCC 14858161 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGT---ATGTATCAATAAGTAAGCT 14496 |||||||||| |||| ||||| || ||| | | ||||||| || || ||||| Sbjct 14858160 ATTAAATAAAAATTCC--CTCTT-----CTCGAAGTCTCTGATGTATCTATGAGCAAGCT 14858108 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||| | ||| |||| | ||| | || ||||| || || || || || | || ||| Sbjct 14858107 ATATGTCTCATAGTGAACGTTCTTGATGAGGATCTGGAAGCCGTAGAAGCAGCAAGGTTC 14858048 Query 14557 --TGACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613 |||| || || | ||| | || | || ||||||||| ||| || || ||||| Sbjct 14858047 AGGGACC--TGCACTTCCTGGCTGAAGT-GCTCTACCAAATTTTTATTTACAATTCCATC 14857991 Query 14614 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 ||| |||||||||| || || |||| ||||| || | ||| || |||| || Sbjct 14857990 ACTGGCTGCAAAAACGGCTAAGATGTGAGAGATAAAATACTTCTCATCGGGTTTGAGCTT 14857931 Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 ||||| | | | |||||| || || || || || || |||||||||| Sbjct 14857930 GTTCCAGTGAGGCAGATCCTTTGATAGGTCAACCTCTTCTGCTGTCCAAAA 14857880 >seq26 Length=26652979 Score = 143 bits (158), Expect = 3e-29 Identities = 583/907 (64%), Gaps = 29/907 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13913 ||||| |||||||| || | |||| ||| || | | | | || |||| ||||| Sbjct 3407719 TAAAAGTCAACATCCAAAGCAAAAGAATTCTC--CGTAGGACTGGACATAATTCCCATCC 3407776 Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 | |||||||| ||||| || ||||||| ||| || || |||||||| | |||| | Sbjct 3407777 TCTGATATTCGTCTACTCTCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAAAATATGCT 3407836 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACA----CTTTATCACAACCTAGTTCTAAT 14029 |||| || || ||||||||| | |||| || | | || | | || ||||| | Sbjct 3407837 CCATGAAGTCGAATGGATTT-TCCACATGAAAAACCTCCTTGTTGAACCCCAGTTCCAGC 3407895 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 | | || || || | ||| || || || || |||||||| || ||||| || || Sbjct 3407896 ATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATCCCGATG 3407955 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || | ||||| | | ||| | || || | || || | || | | ||| Sbjct 3407956 AGCTC-ACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATTG---ATA 3408011 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACA 14205 || ||| | | | | || |||| | | | || || || || || | || Sbjct 3408012 ATGATCTCCTTCACT-CTCTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAGGCA 3408070 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||| ||||| || | |||||| ||||| ||| ||||| ||| ||||| || | || Sbjct 3408071 GGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAGACC 3408130 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||| | ||| |||| || | | | || || | || || || ||||||||||| || Sbjct 3408131 AGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAGAT 3408190 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 || || | || ||||| || | | ||||||||| | | | | ||||| | | Sbjct 3408191 CCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCAAG 3408250 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| ||||| || | || || || || | ||| || || || | |||| Sbjct 3408251 CCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTAAA 3408310 Query 14446 TAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | | || | ||||| ||| || || ||| || |||||||| | || |||||| Sbjct 3408311 CAGAAACTCTCTTTCTTTGGAGTCTTT--AACGTAAGTGTCAATAAGGAGACTGTACATT 3408368 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||||| || || |||||||| || || || || ||||| ||||| | ||||||| Sbjct 3408369 TCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3408428 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 || || ||| | ||||| || ||| ||| || || | ||| ||||| || || ||| Sbjct 3408429 TGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGCA 3408488 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCG 14683 || || | | | | | |||||| ||| ||| || | ||| || ||| | Sbjct 3408489 AAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCTTCCCAGT-- 3408546 Query 14684 GCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 ||| || || || |||||||| | | ||| | |||||||| || | ||||| | Sbjct 3408547 GCTGAATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTTTCT 3408603 Query 14742 TATACAT 14748 ||||||| Sbjct 3408604 TATACAT 3408610 >seq51 Length=17238616 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 11637 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11696 ||| | || || | || |||||||| |||| ||| || | | | |||| |||| | Sbjct 14409367 GTATCGTCCAATCCTTGAACTTCTTCTATTTCTGGGTAATAAATCTGTTCACAAATGAGC 14409426 Query 11697 TGCGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11756 || || | |||||||||| |||| | | ||| | | ||| ||| ||||| | || | Sbjct 14409427 TGGGCAATTCGATCGCCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACA 14409486 Query 11757 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 || |||| ||| || ||||||||||||||||| ||||| |||| | ||||||| Sbjct 14409487 ACGCCAACGTTTCCTCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATG 14409540 >seq136 Length=5168023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| |||||||||||||| ||||| || | || ||||| | ||| ||||| | Sbjct 4986658 CCTCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCT 4986717 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || |||| || || || ||||||||||| || || || || |||||||| | Sbjct 4986718 TGAGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGG 4986777 Query 14346 C 14346 | Sbjct 4986778 C 4986778 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13913 ||||| ||| |||| || | |||| ||| || | | | | || ||||| ||||| Sbjct 4985622 TAAAAGTCAGCATCCAAAGTAAAAGAATTCTC--CATGGGACTGGACATAACTCCCATCC 4985679 Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 | |||||||| | ||||| || ||||||||||| || || |||||||| || ||||| | Sbjct 4985680 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4985739 Query 13974 CCATAAAATCAAATGGATTT 13993 |||| || || ||||||||| Sbjct 4985740 CCATGAAGTCGAATGGATTT 4985759 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 14454 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| ||||| ||| ||| |||||| || |||||||| | || ||||||||||| || Sbjct 4987907 CCTT-TCTTTGGAGTCCTT--AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATG 4987963 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||||| || || || || ||||| ||||| | ||||||| Sbjct 4987964 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 4988010 Score = 82.4 bits (90), Expect = 7e-11 Identities = 127/180 (71%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 14483 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14542 |||| ||| | |||||||||||||| || |||||||||| || || || |||||| | Sbjct 68456 TCAAGAAGGAGACTATACATTTCAGAATGCATGTTTTCCAGGGCCATTTGGAAACCACAG 68397 Query 14543 AAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTA 14602 ||||| ||||||| | ||| || ||| | |||| || ||| ||| ||||| Sbjct 68396 AAACAATGGGCTTCTGTCATTTGAACTTCTCGGCTAAATTGCTCCACCATATTCTCATTG 68337 Query 14603 ACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14662 ||| | | |||||| | |||| ||| |||| | | | |||||| ||| ||| ||| Sbjct 68336 ACTTTGCAATCACTGGGAGCAAGAAA-GCCAGAACATGTGAAATAAAATATCTCTCCTCA 68278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482320102005720