Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq148 87.8 1e-12 seq16 82.4 6e-11 >seq148 Length=4887613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || ||||| || ||||||||||| | | || | ||| Sbjct 4050788 AAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 4050847 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | |||||||| ||| |||| || || || || || || | |||||| ||||| Sbjct 4050848 TTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 4050907 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | ||| || |||| ||| || ||| | ||||||| | Sbjct 4050908 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGT 4050967 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || |||||||||||||| Sbjct 4050968 CTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 4051003 >seq16 Length=31725842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || |||||||||||||| || | || || | |||||||| ||| Sbjct 21647049 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATCTTCCAGTTGC 21647108 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || ||||| ||||| || | ||||||||||| || | | Sbjct 21647109 TTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT-T 21647167 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | | | |||||| ||| || || | |||||| | || || || Sbjct 21647168 GGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 21647227 Query 18302 CAATGTTTTTACAAAAATTTGCATTTT 18328 | |||||||||||||| ||||| || Sbjct 21647228 AAGAGTTTTTACAAAAATCTGCATCTT 21647254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379324448254605