Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 232 6e-56 seq88 120 3e-22 seq40 109 5e-19 seq16 107 2e-18 seq126 96.9 3e-15 seq22 82.4 7e-11 >seq1 Length=78885850 Score = 232 bits (256), Expect = 6e-56 Identities = 930/1453 (64%), Gaps = 42/1453 (3%) Strand=Plus/Plus Query 22130 TTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCG 22189 || || || ||| | || | | ||||||||| || ||||||| |||| |||||| | Sbjct 12367055 TTAGCTGCAGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAACCCTGCTTCCAACCA 12367114 Query 22190 TAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGAC 22249 || || || || || | || ||||| | ||| | || | | || || ||| Sbjct 12367115 TAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGTTCAAAGAC 12367174 Query 22250 TGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGAC 22309 || || ||||| || || || |||| ||| || ||||| || | | || | || Sbjct 12367175 TGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGAACAGTTTTCTGAGAG 12367234 Query 22310 ATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTAT--CGATTCGATCCTCT 22367 |||||||| || |||| || || ||| | | || || || | | | || |||| Sbjct 12367235 ATTTCCCACACCATCTTATAAAGCTGCTTCAGGTCATCAGGAATTTCCAGT--ATGCTCT 12367292 Query 22368 GGACGGACCCGTTATTGTGT---ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGA 22424 || | |||| | || || |||||| || || ||||| ||||| Sbjct 12367293 GGGCA--------ATTGCATGCAATAATTTGATTTTTCATTTCTTCATTCCATAAACCCC 12367344 Query 22425 TGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGC 22484 | || | |||||| | | |||| | || | | ||||| || || ||||||| | Sbjct 12367345 ACTCTGTAAGATCTTTCAATAAATGAGGATTTGCAATCTGAAATTCTCCTGACAAGATTC 12367404 Query 22485 GGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAG 22544 || ||| |||||| || | ||||| | || || || || |||| ||||||| Sbjct 12367405 TTCGAGTGTAGATGTTGCTAGTATAAGGTTCAATGGACTCGTTATTCCCCAAGATCTGAG 12367464 Query 22545 CGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAA 22604 | || ||||| || || || || || | |||| |||||| | || | ||||| || Sbjct 12367465 CAGTTGAAGCAGTAGGTATTGGGGCAATAAGTAAACTGTTTCTTATACCATACTTTGCAA 12367524 Query 22605 TTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATAT 22664 | || |||||| | ||||||||| || || | || || ||||| |||||| | Sbjct 12367525 TCTTCTCCTTGAGAAGTTTCCAGTCCCATAGGTCTGTGGGAGTAACATT---CCACATTT 12367581 Query 22665 CGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA 22724 | || | | || || | || ||| || || ||||| || || ||| Sbjct 12367582 CATACCAAAGAATTCCTTTGCTTACTGGAGAGCCCTCATAGGTTTCATATGGGTCATGCT 12367641 Query 22725 TCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 | ||| || || ||||| || |||| || | ||||| |||||||| ||||||| || Sbjct 12367642 CCTTGGCTAGATCACAGCTGGCTTCCAGGGCTACATAATAAATAGTCTCAAAGATTTGCT 12367701 Query 22785 TGTTCAAT---TCGGCGGCGGCGACGCTTTCGTACGGCATA-CGCATCATCACGAACGCG 22840 |||||||| | ||| | | ||| |||| | || ||| | ||||| | || | Sbjct 12367702 TGTTCAATAACTGGGCCTCTG-GAC--TTTCAAAAGG-ATATCTCATCAGGATAAAAGTA 12367757 Query 22841 TCCGCCATACCCTGAACGCCTATACCGATCGGTC---GGTTTTTCAGATTCGACACTTTT 22897 || |||| | ||||| || || || || || | ||| ||| ||| || | | | Sbjct 12367758 TCTGCCAGGTCTTGAACCCCAATTCCAATGGGGCAATGGTGTTT---ATTTGATAAGTGT 12367814 Query 22898 GCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAAT- 22956 ||||| || | ||| || | || || || || | ||||| |||| | ||||| Sbjct 12367815 GCCTCTGGGACAGGGTAGTAGTTTATATTAATAATTTTATTCAAATTTCGG---ACAATG 12367871 Query 22957 --TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTG 23014 ||| || | | |||||| || | | || ||| || | Sbjct 12367872 ACTTTAGTGACTTCTGCCAATTTCTTAAAGTCATATGTGTGTTCTGATATGACATACATT 12367931 Query 23015 TTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACA 23074 || | ||| | || || | || || || || ||||| |||||| || |||||||| Sbjct 12367932 TTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTGGTATACTCTACT 12367991 Query 23075 ATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGA 23134 ||||| || || |||||||| || || || || |||| || |||||||| || || Sbjct 12367992 ATTTCTGTGCACAGATTGCTGCATTTGATTGTTCCCAGGTTCTGTTGGTTGCTCTTCTGA 12368051 Query 23135 TTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATC 23194 || | ||||| |||||||||||||| || ||||| ||||| ||| | ||| ||||| Sbjct 12368052 TTATAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTGAGTCTCAATGATG 12368111 Query 23195 GCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTT 23253 || ||| | |||||| | ||| || || || || |||| |||||| || | Sbjct 12368112 GCATACCAAAGTTGCTGAGCTTTTACAACTC-TGCGAACATGACCTTGTTCCTCATAACT 12368170 Query 23254 TTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG 23313 || |||||| ||||| || | || || || |||| || || ||| | || Sbjct 12368171 TTCATACAACATCTCAAACTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGG 12368230 Query 23314 ACACATGAGACTCCA-CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372 ||| || | | ||| ||| | | | || || || |||| || ||||| || || | Sbjct 12368231 ACATATCAAAGGCCAGTCCTGA-TTAGTCTCGACTTGTTTCATGAAGAGATCTGGAATTC 12368289 Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432 | || || |||| || || | ||| || ||| || || || |||||||| || |||| Sbjct 12368290 AAAGGGCAAAGAAAAGATCCCTGGCATGCTGCTCTTCCTTTCCTGTGTTCTTCTTTAAAT 12368349 Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492 | | ||| || || | ||| || ||| ||||| ||||||| ||||| || || || Sbjct 12368350 CAAGAAACTCAAAGATGTCTAAATACCAAGGCTCCAGGTAAATAGCAAATGCCCCAGGAT 12368409 Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552 ||| || || || ||||| || || || | ||| |||| |||| ||| ||||| || | Sbjct 12368410 GCTTGTTTCCACCTTGATCAACATATCGACCTGTGCTGTTATACATTCTCAGCATTGGTA 12368469 Query 23553 CGAGACCGTTGGA 23565 | || || || || Sbjct 12368470 CAAGGCCATTAGA 12368482 >seq88 Length=9715273 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || || || Sbjct 5552735 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTT 5552676 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||| Sbjct 5552675 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTG 5552616 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 5552615 CCTGTCTCTGTCTGAGACTCAATGATGGC 5552587 >seq40 Length=22651954 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||| || |||||| |||| || || || Sbjct 7366708 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 7366649 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||| ||| | || || |||||| Sbjct 7366648 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 7366589 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| ||||| || ||||||||| |||| || Sbjct 7366588 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGA 7366554 >seq16 Length=31725842 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| ||||| ||||| || || || || ||||| |||| |||||||| Sbjct 21647254 AAGATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 21647195 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || ||| | || ||| |||||||| | || || || Sbjct 21647194 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 21647135 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||| || || ||||||| | | | ||| || ||||| Sbjct 21647134 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGA-TGGAGGTACTTTGTCTGATTA 21647076 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| || || || |||||||| || Sbjct 21647075 CAACATTCAAAAGGAGTCCACCCTTCATCTTGT 21647043 >seq126 Length=6421402 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || ||||| || || ||||| | || | |||||| Sbjct 2410041 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACCATCACACTTGAGGCTGAACCC 2409982 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || ||| | || ||| |||||||| | || || || Sbjct 2409981 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2409922 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||| || || ||||| | | | | ||| || ||||| Sbjct 2409921 CAGCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAACA-TGGACGTACTTTGTCGGATTA 2409863 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || | |||||||| | | | ||||| Sbjct 2409862 CAACATTCAAAAGGAGTCCATCCTTCATCTTGCATTGAGACT 2409821 >seq22 Length=29172479 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||| | ||||| ||||| ||||| | |||||| |||| || || || Sbjct 11894571 ATGCAGATCTTCCTGAAGACCCTGACGGGCAAGGCCATCACCCTCGAGGTGGAGCCCAGT 11894512 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | | |||||| | ||| |||||||| ||| | || || |||||| Sbjct 11894511 GACACCACCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 11894452 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| ||||| || | ||||||| |||| || | || | || || ||| Sbjct 11894451 CAGCGTCTGATATTTGCCGACAAACAGCTGGAGGATGGCAGACCTCTCTCTGACTACAAC 11894392 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||||| || || || || ||||| ||| Sbjct 11894391 ATCTAGAAAGAGTCCACCCTGCACCTGGTGCTT 11894359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445742835673680