Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq26 123 5e-23 >seq26 Length=26652979 Score = 123 bits (136), Expect = 5e-23 Identities = 301/448 (67%), Gaps = 25/448 (6%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||||||||| || | ||||| ||||||||| ||| | || || || || |||| | Sbjct 3408213 TTGCCTTTGCCGCCATGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCGATCTTCTTGC 3408154 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAA-TGAGTTCATTTCTAGGGAC 102037 ||||||| ||| || ||||||||||||||| ||||| ||| || | | || ||| Sbjct 3408153 TCAAGAAACAGGGAATAATGCCTGGTCTCACCTTTTCCAACTGACTT-ACTAGCAGAGAC 3408095 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || || | || | |||||||| ||| || |||| ||| |||| | | || Sbjct 3408094 GAGGGCTTGCACTGTGACTTTGCCTGCCTGATGTT---CAAGCACCTTGTGCACAAACCC 3408038 Query 102098 TCA----AGAGA---AAGGATTCTTGA-AATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149 ||| ||||| ||||| || ||| ||| | ||| || | || || || | Sbjct 3408037 TCAGAGTAGAGAGTGAAGGA-----GATCATTATCA---ATGCCTTCAGGATCGAGCAGG 3407986 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 | || ||||| | || ||||||| | | | | || ||||||||||| || |||| | Sbjct 3407985 AGTTCCTCACCGAGGCCTTGCCTGTGAGCTCA-TCGGGATGAACTGCAATTTAATGAAGC 3407927 Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCA---CT 102266 ||||||| ||||| ||||| || | || || | ||| |||| | | ||| | | Sbjct 3407926 AGTACATCGAATTCGTGGCTGACAGGCTTATGCTGGAACTGGGGTTCAACAAGGAGGTTT 3407867 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 | |||| || || ||| |||||||| |||||| || || ||||| ||| Sbjct 3407866 TTCATGTGGAAAATCCATTCGACTTCATGGAGCATATTTTTCTGGAAGGAAAGACGAACC 3407807 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 | ||||| |||||||| | ||| ||||| Sbjct 3407806 TCTTTGAGAAGAGAGTAGACGAATATCA 3407779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989530380318695