Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003288.1 Length=43081 Score E Sequences producing significant alignments: (Bits) Value seq371 163 8e-36 >seq371 Length=40469 Score = 163 bits (180), Expect = 8e-36 Identities = 308/453 (68%), Gaps = 7/453 (2%) Strand=Plus/Minus Query 12288 AAGCGACGATATTTGATAT-TTAGAGGTG-GACGA---TGAGTAAATACAACGCTAAGAA 12342 || ||| ||||||||| | ||| ||| | | || ||||||||||||| || ||||| Sbjct 786 AAACGAATATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAA 727 Query 12343 AGTTGAGTATAAAGGAATTGTATTTGATAGCAAAGTAGAGTGTGAATATTACCAATATTT 12402 ||||||||||||||| || || ||||||||||| || ||||| || ||| | || || Sbjct 726 AGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTT 667 Query 12403 AGAAAATAATATGAATGGTAC-TAACTATGATCGTATCGAAATACAACCGAAATTTNNNN 12461 |||| | | || ||| || | ||||| |||||| |||||||||| || | Sbjct 666 AGAACA-ACGATTAATTATAGATGGTTATGACTATATCGAGATACAACCGAGATATGAGC 608 Query 12462 NNNNNNNNNNNNNNGGGAAACAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGA 12521 || |||||| | | | ||||| || || || | | |||| Sbjct 607 TAATACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGA 548 Query 12522 AGGAAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACA 12581 | | | || || ||||||| |||||||||||||| | |||||| ||| || || Sbjct 547 ATAACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGT 488 Query 12582 TCAAAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAG 12641 | || |||||| |||| ||||||| ||| |||| || | || ||||||||||||| Sbjct 487 TAAAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAG 428 Query 12642 CGCCTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTGAAAGTCAGACGTA 12701 | ||||| ||||||||| |||| ||| | ||||| || || || || ||||| Sbjct 427 CACCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCG 368 Query 12702 AAAGAAAAAGAGAAATGAAGTGATTTAATGCAA 12734 || | || | || | || |||||| ||| || Sbjct 367 AACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 9192 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCTG 9251 |||| ||||| |||||| ||||| | || || || || || || |||| | || | Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 9252 ACTTAGCACATTATGAAGCAGTAGGAAGAGGTATGAACAGAAACAAGATGAATCACTACG 9311 | ||||||||||| |||||||||| | || |||||| |||||| | || | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 9312 ACAAACATATATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCGATTGGTGTTA 9371 |||| | |||||| ||||| | ||||| || |||||||| | || || | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 9372 AGTCGTTTGA-TGATAAATATCACTTGCATGACTCGTGGCTAAAAGTTGATGAGAGGCTT 9430 | | |||| | | | || ||||| || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 9431 AACAAAATGCTGAAAGGAGAGAAA 9454 ||||||||||||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137730682903814