Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 360 2e-94 seq26 165 8e-36 seq88 111 1e-19 >seq1 Length=78885850 Score = 360 bits (398), Expect = 2e-94 Identities = 1149/1758 (65%), Gaps = 27/1758 (2%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||||||| | ||| | | |||| || | ||||||||| ||||| || | ||| || Sbjct 12367049 ATAGGATTAGCTGCAGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAACCCTGCTTC 12367108 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || || || || ||||||||||| || || | || |||| | | | |||| || || Sbjct 12367109 CAACCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGTTC 12367168 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | || || |||||||| || || |||||||| || |||||||| | | || | ||| Sbjct 12367169 AAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGAACAGTTTTC 12367228 Query 36985 TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAAATGT 37044 ||||| || ||||| ||| | ||||| | || || | | ||| || ||| | | Sbjct 12367229 TGAGAGATTTCCCACACCATCTTATAAAGCTGCTTCAGGTCATCAGG--AATTTCCAGTA 12367286 Query 37045 TGAATAGAACCATT--ATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTC 37102 || | | ||| ||| || | ||| ||| || || || | |||||| | | | Sbjct 12367287 TGCTCTGGGCAATTGCATGCAATA--ATTTGATTTTTCATTTCTTCATTCCATAAACCCC 12367344 Query 37103 TACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACT 37161 ||| | | || ||| |||||| || |||||| ||| |||||| ||||| || || | | Sbjct 12367345 -ACTCTGTAAGATCTTTCAATAAATGAGGATTTGCAATCTGAAATTCTCCTGACAAGATT 12367403 Query 37162 CTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGA 37221 |||| || || || ||||||||||| |||||||||||||| ||||| | || || ||| Sbjct 12367404 CTTCGAGTGTAGATGTTGCTAGTATAAGGTTCAATGGACTCGTTATTCCCCAAGATCTGA 12367463 Query 37222 GATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTA 37281 | || || |||||||| ||||| || || || | || ||||| | |||| | | Sbjct 12367464 GCAGTTGAAGCAGTAGGTATTGGGGCAATAAGTAAACTGTTTCTTATACCATACTTTGCA 12367523 Query 37282 ATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATAT 37339 || ||| || || ||||| ||||||| ||||| || || | || |||||| | Sbjct 12367524 ATCTTCTCCTTGAGAAGTTTCCAGTCCCATAGGTCTGTGGGAGTAACATT--CCACATTT 12367581 Query 37340 CATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAA 37399 |||| ||||| ||||| || ||||||| | | ||| || ||||| || | | Sbjct 12367582 CATACCAAAGAATTCCTTTGCTTACTGGAGAGCCCTCATAGGTTTCATATGGGTCATGCT 12367641 Query 37400 TTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTA 37459 || ||||| || || || | ||| || || ||||||| || || || || ||||| Sbjct 12367642 CCTTGGCTAGATCACAGCTGGCTTCCAGGGCTACATAATAAATAGTCTCAAAGATTTGCT 12367701 Query 37460 TATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAG 37519 | || |||| | || ||| || || || | ||| | || | ||||| ||| | Sbjct 12367702 TGTTCAATAACTGGGCCTCTGGACTTTCAAAAGGATATCTCATCAGGATAAAAGTATCTG 12367761 Query 37520 CCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTA 37579 ||| | ||||| || || || ||||| | ||| | ||||| ||| | ||| Sbjct 12367762 CCAGGTCTTGAACCCCAATTCCAATGGGGCAATGGTGTTTATTTGATAAGTGTGCCTCTG 12367821 Query 37580 TCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAA 37639 || || || || || |||| || |||||||| | |||| || | | ||| || | Sbjct 12367822 GGACAGGGTAGTAGTTTATATTAATAATTTTATTCAAATTTCGGACAATGACTTTAGTGA 12367881 Query 37640 TTATTCTCAACTTGTCGAA--CATAAATACGTTATTAT-TAACAAATTTACTCAACGAAA 37696 | | ||| || | || |||| | ||| | || | ||| | | ||| | | Sbjct 12367882 CTTCTGCCAATTTCTTAAAGTCATATGTGTGTTCTGATATGACATACATTTTCAGGGCCA 12367941 Query 37697 TAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTAC 37756 || | | ||||| || ||||| ||||||| | | || | | || || ||||| | Sbjct 12367942 GGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGC 12368001 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | ||||| || || | |||||||||| || ||| ||| || | |||| | |||| Sbjct 12368002 ACAGATTGCTGCATTTGATTGTTCCCAGGTTCTGTTGGTTGCTCTTCTGATTATAGGAAT 12368061 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 |||| || || || || || || ||| ||| | |||| ||| || || | | ||| | Sbjct 12368062 CTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTGAGTCTCAATGATGGCATACCA-A 12368120 Query 37877 AACTTCT-TGCTTTAACGATCGCTTTAAtttttttCTTTGTT--TCGTATTCTATATATA 37933 | | || ||||| || | | || | | | ||||| || || | ||| | Sbjct 12368121 AGTTGCTGAGCTTTTAC-AACTCTGCGA-ACATGACCTTGTTCCTCATAACTTTCATACA 12368178 Query 37934 ATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTA 37993 | | | ||| || | ||||| || || | || |||||||| |||||| || | Sbjct 12368179 ACATCTCAAACTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACATATCA 12368238 Query 37994 GAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAG 38053 || ||| || | || | || || ||| ||| || | ||| || | || | ||| Sbjct 12368239 AAGGCCAGTCCTGATTAGTCTCGACTTGTTTCATGAAGAGATCTGGAATTCAAAGGGCAA 12368298 Query 38054 TAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAAT 38113 || | ||| ||| | ||||| || ||| ||||| |||| ||||| | Sbjct 12368299 AGAAAAGATCCCTGGCATGCTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACT 12368358 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 | || || || | ||| || || | ||||| | | ||| || || || | | Sbjct 12368359 CAAAGATGTCTAAATACCAAGGCTCCAGGTAAATAGCAAATGCCCCAGGATGCTTGTTTC 12368418 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || |||| || ||||| | ||||| | ||||| ||||| | ||| ||||| | |||| Sbjct 12368419 CACCTTGATCAACATATCGACCTGTGCTGTTATACATTCTCAGCATTGGTACAAGGCCAT 12368478 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 |||| ||||| || | || | || || | || |||| | ||| ||| | | ||| Sbjct 12368479 TAGAATTGCCATTGGTCCCAGCAATGTACCTGCCAGTAGCCCAAATACAACTCA-CAACA 12368537 Query 38294 A-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 | || ||||| || ||| ||| || || || || || || || | || || | || Sbjct 12368538 ACACCAATTCCCCCAGCAGATTTAGAGATCAATGCACACTGCTTCAGAGTGCCATAAATG 12368597 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTG-AGGCAATGG 38411 |||| | |||||||| || || || | ||||| ||||| | | | ||| | | Sbjct 12368598 CCTTAGAAGCTGTCATCTTTCATACTCAGAAGGAAACAGCTAGAAAGTGGTGGGCTGTTG 12368657 Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 || || || || || || ||||||| ||||| | ||||| || || || | | || Sbjct 12368658 -GTACCAGCATTGAAGAA--TAGGAGAAGCATGAGTAAACCACTTCTCGGAAAGAAGGTT 12368714 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 ||||||||| || || |||| || || | |||||| || | |||||||||||| || Sbjct 12368715 ATATGTTTCAGTTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGATACCCTCATCAG 12368774 Query 38532 CATATGTTGTGGTCTTTC 38549 ||||||| | || ||||| Sbjct 12368775 CATATGTCGAGGCCTTTC 12368792 >seq26 Length=26652979 Score = 165 bits (182), Expect = 8e-36 Identities = 575/889 (65%), Gaps = 20/889 (2%) Strand=Plus/Plus Query 11333 CCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGA 11391 |||||| | |||||||| |||| || | || || | || ||||| ||||| || | Sbjct 3407770 CCCATCCTCTGATATTCGTCTACTC-TCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAA 3407828 Query 11392 TATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTT--TTTCACAACCTAAC 11449 |||| |||||| ||| || ||||| | |||| || || | || |||| | Sbjct 3407829 AATATGCTCCATGAAGTCGAATGGATTTTCCACATGAAAAACCTCCTTGTTGAACCCCAG 3407888 Query 11450 TCTGTTAATAATC-TATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 | |||| | | || || |||||||| || ||||| ||||||| || ||||| Sbjct 3407889 TTCCAGCATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCAT 3407948 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || || || || || | || | || | ||||||| || || | | |||| Sbjct 3407949 CCCGATGAGCTC-ACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATT 3408007 Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 || || ||| | | | | || || ||| || | | || || ||||| | Sbjct 3408008 GATAATGATCTCCTTCACTCTCTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAG 3408067 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 || ||||| ||||| || || || |||||||| || | ||| || ||||| || | Sbjct 3408068 GCAGGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAG 3408127 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| | ||| |||| || | | | || || | ||||| ||||| |||||||| Sbjct 3408128 ACCAGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAA 3408187 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGA 11805 || || |||| || ||||| || | || | ||||||||| |||| ||| Sbjct 3408188 GATCCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCC 3408247 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 | ||| |||||| || || ||||| || | ||| ||| || || || | | | Sbjct 3408248 AAGCCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGT 3408307 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | | | | ||||| | ||| | || || || || || | | ||| ||||| Sbjct 3408308 AAACAGAAACTCTCTTTCTTTGGAGTCTTTAACGTAAGTGTCAATAAGGAGACTGTACAT 3408367 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 ||| ||||| ||||||||||| || ||||| || ||||||||||| || || |||| | Sbjct 3408368 TTCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 3408427 Query 11986 CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 ||| || || ||||| ||| | | |||||| || | || ||||| || | || Sbjct 3408428 CTGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGC 3408487 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCC 12101 ||| || | || | |||| ||||| ||| | || | |||||| | |||| Sbjct 3408488 AAAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAG----TGCTTCCC 3408543 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | ||||| || | ||| | | ||| | |||||||| || | | || Sbjct 3408544 AGTGCTGAATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTT 3408600 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||||| | ||| |||| || |||| ||||| || || || || Sbjct 3408601 TCTTATACATCTGCCAAATATTGTGGTACTCGATAGGAAAGATCACAAA 3408649 >seq88 Length=9715273 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||||| || || || ||||| ||||| ||||||||| Sbjct 5560880 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 5560821 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | || || |||| || || |||||||||||||| || || || | Sbjct 5560820 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 5560761 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 5560760 CTGTTTCTTATACCAT 5560745 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || ||||||||||| || || | || |||| | | | |||| || Sbjct 5567477 TCCAACCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGAATGT 5567418 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| || |||||||| | | || | || Sbjct 5567417 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGAACAGTTT 5567358 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATA 37010 | ||||| || ||||| || || ||||| Sbjct 5567357 TCTGAGAGATTTCCCACACTGTCTTATA 5567330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468500032607760