Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq41 143 2e-29 seq17 123 2e-23 >seq41 Length=20498451 Score = 143 bits (158), Expect = 2e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 |||||| |||||||| |||| || || || || |||||||||||||| ||||| || || Sbjct 11146898 CAGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGG 11146839 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || ||||||||||| |||| | |||||||||||||||||||||||| || | Sbjct 11146838 CACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCAC 11146779 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 |||||| ||||| || | | || || ||||| || |||||| | | |||||| Sbjct 11146778 CACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAGAGGGAGGTC 11146725 >seq17 Length=29327949 Score = 123 bits (136), Expect = 2e-23 Identities = 170/239 (71%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||| ||| || ||||| || || || | ||| || || |||||||| || Sbjct 14730718 CAGCGGCTCAATGTGATTCAGGTAAATATGTGCATCTCTCAAAGTATGTACAAAGTCACC 14730777 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || | |||| ||||| || |||| || || || || ||||||| |||||||||||| Sbjct 14730778 TGGCTGCGGGCCAGTGACATGGGCGACCATGTAGGTGAGCAGGGCGTTGCTGGCGATGTT 14730837 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || ||||||||||| ||| | ||||||||||||||||||| |||| || Sbjct 14730838 G---------CCCAGGCCCATGTCCCTGGAACGCTGGTACAGCTGGCAGGACGGCTCTCC 14730888 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGT 21162 ||||||| ||||| || | |||| || ||||| || ||||| | | ||||| Sbjct 14730889 GTTCACCACGTAGAACTGGCAGAGGGCGTGGCAGGGAGGCAGCACCATCAGAGGGAGGT 14730947 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||| ||| || ||||| || || || ||||| || || | ||||| || Sbjct 23985635 CAGTGGCTCAATGTGATTTAGTTAAACATGTGCATCTCCCAATGTATGTATGAAGTCACC 23985576 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || | |||| ||||| ||||||| || || || || ||||| ||||||| | ||| Sbjct 23985575 TGGCTGCGGGCCTGTGACCTGAGCGACCATGTAGGTGAGCAGGGCACAGCTGGCAAAGTT 23985516 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGG--------ACCTCTGGTACAGCTGGCAGGAC 21095 || || | || | |||||||| | | || |||||||||| |||||||| Sbjct 23985515 GAAAGGCATGCCCAAGCCCATGTACCCAGTACATGGTACAGCTGGTACAGCGGGCAGGAC 23985456 Query 21096 AGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCA 21150 |||||||| ||| ||| ||||| || | |||| || ||||| || |||| Sbjct 23985455 AGCTCCCCATTCACCAAGTAGAACTGGCAGAGGGCGTGGCAGGGAGGCAGTGCCA 23985401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427753952023920