Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16 111 2e-19 seq126 105 7e-18 seq40 95.1 1e-14 seq39 95.1 1e-14 seq148 89.7 5e-13 >seq16 Length=31725842 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || || | ||| || | |||| || ||||| ||||||||||| ||||| | Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 139598 ATTGT-GCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || ||| | ||||| || || ||||||||| ||||||| | ||||||||| ||||| Sbjct 21647085 AAAGTACCTCCA-TCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||||| | ||| | ||||| | ||| || || Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || || | |||||||| || || ||||| Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq126 Length=6421402 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGC 139629 ||||| ||||||||||| ||||| || || | || | | ||| || || |||||||| Sbjct 2409845 GACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCA-TGTTCCAGTTGCTTACCAGC 2409903 Query 139630 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAG 139689 | ||||||| | ||||||||| ||||| || ||||| || || ||| || ||||| Sbjct 2409904 AAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTAC 2409963 Query 139690 CTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTT 139749 | ||| | ||||| | ||| || |||||| || | ||||| || || | ||||| Sbjct 2409964 ATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTT 2410023 Query 139750 TACGAATATTTGCAT 139764 |||||| || ||||| Sbjct 2410024 TACGAAAATCTGCAT 2410038 >seq40 Length=22651954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || |||||||| || ||| | |||||||| ||||| || || || ||||| || ||| Sbjct 7366554 TCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 7366613 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||||| ||||||||||||| | ||| | Sbjct 7366614 TCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 7366673 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 7366674 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq39 Length=21454635 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCA 139630 |||| ||||||||||| ||||| || || | || | ||||| || || ||||||||| Sbjct 17272271 ACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTACCAGCA 17272213 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 ||||||| | ||||||||| |||| || ||||| || || ||| || ||||| Sbjct 17272212 AAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACA 17272153 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| |||||| ||| || ||||| | || | ||||| | | || |||||| Sbjct 17272152 TTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGGTCTTCTCCATAAAGGTTTTT 17272093 Query 139751 ACGAATATTTGCAT 139764 ||||| || ||||| Sbjct 17272092 ACGAAAATCTGCAT 17272079 >seq148 Length=4887613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || | |||| ||||| |||||||| || Sbjct 4050804 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCT 4050863 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||||||||||| || ||| || || Sbjct 4050864 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 4050923 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || |||| ||||| || | ||| | |||||||| |||| || Sbjct 4050924 ACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 4050983 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 4050984 TTCACGAAAATTTGCAT 4051000 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || || || ||||| | |||| Sbjct 4050558 CGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCA 4050617 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| ||||||||||| Sbjct 4050618 TCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 4050677 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || |||| | || | || || |||| ||||| || | ||| | Sbjct 4050678 TCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGGGTGATG 4050737 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 4050738 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496037776816800