Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq48 178 1e-39 seq26 143 3e-29 seq136 102 8e-17 seq51 93.3 4e-14 >seq48 Length=20532749 Score = 178 bits (196), Expect = 1e-39 Identities = 542/827 (66%), Gaps = 48/827 (6%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| || |||| ||| |||||||| || ||||| ||||| | || |||||||| Sbjct 14858675 TTGATACTCTGGCACTCATTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTC 14858616 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTA 13701 ||||||||| || |||||| | | ||| || || | | || || ||||| | || | Sbjct 14858615 CATAAAATCGAAGGGATTTTCTCCCTGAAAAACCTT-TGAGAATCCAAGTTCCACCAGCA 14858557 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 |||| || | | |||||||||||| || ||| ||| |||| ||||| | || || Sbjct 14858556 ATCTGTCCACCACAAACTCAATATACTGCTTCATCAAAACACAGTTCATCCTGATCAGAC 14858497 Query 13762 TTA----CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 | |||| || | || ||||| || | || || ||||| ||| | || Sbjct 14858496 CGAATAGCAGGGCTTCT----GTCAAAAACTCCTACTCGATTCTGACAGCATCTATGATG 14858441 Query 13818 ATAAT-TGTAATAAT--CTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAAC 13872 || || | | ||| | | | | || ||| || | || || | | Sbjct 14858440 ATCTCCTGGACCCAGTCCTCCTCAT-----GCTTGTTCATTAAATACTGGAACATCAGGC 14858386 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||| ||||| |||| ||||||||||| || | || || || | | Sbjct 14858385 AGGCAAATTCACAGTGAAATCCCTCATCTCTGCTGA----------GGAGAAGGTGAGGC 14858336 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 ||||||| | |||| || || | ||| || || || |||| ||||| | ||||| | Sbjct 14858335 CTGGCATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAAGAACA 14858276 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC--AAACGATGCTTTTTTGTTCGA 14050 ||| || ||||| || || || | || ||||| || | | ||| ||| | Sbjct 14858275 CTCCTTCCACTGCTGCGAAGGCCA--CCTCCCTCTCCCTGAAAGCAGACTTTCTGTCTGC 14858218 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 |||||| ||||| || | |||||| |||| | | |||||||||||||| |||| Sbjct 14858217 TATCCACCGCAAGGCCCAGTCTGCTTTTTTCTTAACATATTCCATTGTTTCAATTCCATT 14858158 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGT---ATGTATCAATAAGTAAGCTATA 14167 ||||||| ||||| ||||| || ||| | | ||||||| || || |||||||| Sbjct 14858157 AAATAAAAATTCC--CTCTT-----CTCGAAGTCTCTGATGTATCTATGAGCAAGCTATA 14858105 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--C 14225 | ||| |||| | ||| | || ||||| || || || ||||| | || ||| Sbjct 14858104 TGTCTCATAGTGAACGTTCTTGATGAGGATCTGGAAGCCGTAGAAGCAGCAAGGTTCAGG 14858045 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 |||| || |||||| | || || ||||||||| ||| || || |||||||| Sbjct 14858044 GACC--TGCACTTCCTGGCTGAAGTGCTCTACCAAATTTTTATTTACAATTCCATCACTG 14857987 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 |||||||||| || || |||| ||||| || | ||| || ||||| || ||| Sbjct 14857986 GCTGCAAAAACGGCTAAGATGTGAGAGATAAAATACTTCTCATCGGGTTTGAGCTTGTTC 14857927 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 || | | | |||||| || || || || || || |||||||||| Sbjct 14857926 CAGTGAGGCAGATCCTTTGATAGGTCAACCTCTTCTGCTGTCCAAAA 14857880 >seq26 Length=26652979 Score = 143 bits (158), Expect = 3e-29 Identities = 584/906 (64%), Gaps = 27/906 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13581 ||||| |||||||| || | |||| ||| || | | | | || |||| ||||| Sbjct 3407719 TAAAAGTCAACATCCAAAGCAAAAGAATTCTC--CGTAGGACTGGACATAATTCCCATCC 3407776 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 | |||||||| ||||| || ||||||| ||| || || |||||||| | |||| | Sbjct 3407777 TCTGATATTCGTCTACTCTCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAAAATATGCT 3407836 Query 13642 CCATAAAATCAAATGGATTTATTGACATAAACA----CTTTATCACAACCTAGTTCTAAT 13697 |||| || || ||||||||| | |||| || | | || | | || ||||| | Sbjct 3407837 CCATGAAGTCGAATGGATTT-TCCACATGAAAAACCTCCTTGTTGAACCCCAGTTCCAGC 3407895 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 | | || ||||| | || || || || || |||||||| || ||||| || || Sbjct 3407896 ATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATCCCGATG 3407955 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || | ||||| | | ||| | || || | || || | || | | ||| Sbjct 3407956 AGCTC-ACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCAT---TGATA 3408011 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACA 13873 || || | | ||| || |||| | | | || || || || || | || Sbjct 3408012 ATGATCTCCTTCA-CTCTCTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAGGCA 3408070 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||||| ||||| || | |||||| ||||| ||| ||||| ||| ||||| || | || Sbjct 3408071 GGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAGACC 3408130 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | ||| |||| || | | | || || | ||||| || ||||||||||| || Sbjct 3408131 AGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAGAT 3408190 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 || || | || ||||| || | | ||||||||| | | | | ||||| | | Sbjct 3408191 CCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCAAG 3408250 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| ||||| || | || || || || | ||| || || || | |||| Sbjct 3408251 CCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTAAA 3408310 Query 14114 TAAATATTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | | || | ||||| ||| ||| || ||| || |||||||| | || |||||| Sbjct 3408311 CAGAAACTCTCTTTCTTTGGAGT-CTT-TAACGTAAGTGTCAATAAGGAGACTGTACATT 3408368 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| || || |||||||| || || || || ||||| || || | ||||| | Sbjct 3408369 TCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3408428 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| | ||||| || ||| ||| || || | ||| ||||| || || ||| Sbjct 3408429 TGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGCA 3408488 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-C 14350 || || | | | | | |||||| ||| ||| || || ||| || ||| | | Sbjct 3408489 AAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCTTCCCAGTGC 3408548 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 || | || || |||||||| | | ||| | |||||||| || | ||||| || Sbjct 3408549 TGA-ATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTTTCTT 3408604 Query 14411 ATACAT 14416 |||||| Sbjct 3408605 ATACAT 3408610 >seq136 Length=5168023 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| |||||||||||||| ||||| || | || ||||| | ||| ||||| | Sbjct 4986658 CCTCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCT 4986717 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || |||| ||||| || ||||||||||| || || || || |||||||| | Sbjct 4986718 TGAGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGG 4986777 Query 14014 C 14014 | Sbjct 4986778 C 4986778 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13581 ||||| ||| |||| || | |||| ||| || | | | | || ||||| ||||| Sbjct 4985622 TAAAAGTCAGCATCCAAAGTAAAAGAATTCTC--CATGGGACTGGACATAACTCCCATCC 4985679 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 | |||||||| | ||||| || ||||||||||| || || |||||||| || ||||| | Sbjct 4985680 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4985739 Query 13642 CCATAAAATCAAATGGATTT 13661 |||| || || ||||||||| Sbjct 4985740 CCATGAAGTCGAATGGATTT 4985759 >seq51 Length=17238616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 11304 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11363 ||| | || || | || |||||||| |||| ||| || | | | |||| |||| | Sbjct 14409367 GTATCGTCCAATCCTTGAACTTCTTCTATTTCTGGGTAATAAATCTGTTCACAAATGAGC 14409426 Query 11364 TGAGCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11423 || || | ||||||||| |||| | | ||| | | ||| ||| ||||| | || | Sbjct 14409427 TGGGCAATTCGATCGCCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACA 14409486 Query 11424 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 || |||| ||| || ||||||||||||||||| ||||| |||| | ||||||| Sbjct 14409487 ACGCCAACGTTTCCTCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATG 14409540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479702640378600