Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq48 159 3e-34 seq26 125 7e-24 seq136 96.9 3e-15 seq51 93.3 4e-14 >seq48 Length=20532749 Score = 159 bits (176), Expect = 3e-34 Identities = 533/822 (65%), Gaps = 38/822 (5%) Strand=Plus/Minus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| || |||| ||| ||||| || || ||||| ||||| | || |||||||| Sbjct 14858675 TTGATACTCTGGCACTCATTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTC 14858616 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATA 13489 |||||||||||| |||||| | | ||| || || | | || || ||||| | | | Sbjct 14858615 CATAAAATCGAAGGGATTTTCTCCCTGAAAAACCTT-TGAGAATCCAAGTTCCACCAGCA 14858557 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 |||| || | | |||||||||||| || ||| ||| |||| ||||| | || || Sbjct 14858556 ATCTGTCCACCACAAACTCAATATACTGCTTCATCAAAACACAGTTCATCCTGATCAGAC 14858497 Query 13550 TTA----CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 | |||| || | || ||||| || | || || ||||| || | || Sbjct 14858496 CGAATAGCAGGGCTTCT----GTCAAAAACTCCTACTCGATTCTGACAGCATCTATGATG 14858441 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 || || | ||| | | | | ||| || | || || | || ||| Sbjct 14858440 ATCTCCTGGACCCAGTCCTCCTCATGCTTGTTCATTAAATACTGGAACATCAGGCAGGCA 14858381 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || ||||| |||| ||||||||||| || | || || || | |||||| Sbjct 14858380 AATTCACAGTGAAATCCCTCATCTCTGCTGAGGAG----------AAGGTGAGGCCTGGC 14858331 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || | |||| || || | ||| || || || | || || || | ||||| | ||| Sbjct 14858330 ATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAAGAACACTCCT 14858271 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCA--AACGATGCTTTTTTGTTTGATATCC 13843 || ||||| || || || | || ||||| || | | ||| ||| || ||||| Sbjct 14858270 TCCACTGCTGCGAAGGCCACC--TCCCTCTCCCTGAAAGCAGACTTTCTGTCTGCTATCC 14858213 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 | ||||| || | |||||| |||| | | ||||||||||| ||| |||| |||| Sbjct 14858212 ACCGCAAGGCCCAGTCTGCTTTTTTCTTAACATATTCCATTGTTTCAATTCCATTAAATA 14858153 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGT---ATGTATCAATAAGTAAGCTATACATTT 13960 || |||| ||||| || ||| | | ||||||| || || |||||||| | | Sbjct 14858152 AAAATTCC--CTCTT-----CTCGAAGTCTCTGATGTATCTATGAGCAAGCTATATGTCT 14858100 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCA 14018 || |||| | ||| | || ||||| || || || || || | || ||| |||| Sbjct 14858099 CATAGTGAACGTTCTTGATGAGGATCTGGAAGCCGTAGAAGCAGCAAGGTTCAGGGACC- 14858041 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || ||| | || ||| |||| |||| ||| ||||| |||||||| ||||| Sbjct 14858040 -TGCACTTCCTGGCTGAAGTGCTCTACCAAATTTTTATTTACAATTCCATCACTGGCTGC 14857982 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 ||||| || || |||| ||||| || | ||| || ||||| || ||||| | Sbjct 14857981 AAAAACGGCTAAGATGTGAGAGATAAAATACTTCTCATCGGGTTTGAGCTTGTTCCAGTG 14857922 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | | |||||| || || || || || || |||||||||| Sbjct 14857921 AGGCAGATCCTTTGATAGGTCAACCTCTTCTGCTGTCCAAAA 14857880 >seq26 Length=26652979 Score = 125 bits (138), Expect = 7e-24 Identities = 580/907 (64%), Gaps = 29/907 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13369 ||||| |||||||| || | |||| ||| || | | | | || |||| ||||| Sbjct 3407719 TAAAAGTCAACATCCAAAGCAAAAGAATTCTC--CGTAGGACTGGACATAATTCCCATCC 3407776 Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 | |||||||| ||||| || ||||| | ||| || || |||||||| | |||| | Sbjct 3407777 TCTGATATTCGTCTACTCTCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAAAATATGCT 3407836 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACA----CTTTATCACAACCTAGTTCTAAT 13485 |||| || |||||||||||| | |||| || | | || | | || ||||| | Sbjct 3407837 CCATGAAGTCGAATGGATTT-TCCACATGAAAAACCTCCTTGTTGAACCCCAGTTCCAGC 3407895 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 | | || ||||| | || || || || || |||||||| || ||||| || || Sbjct 3407896 ATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATCCCGATG 3407955 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 || | ||||| | | || | || || | || || | || | | ||| Sbjct 3407956 AGCTC-ACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATTG---ATA 3408011 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACA 13661 || |||| | | || || |||| | | | || || || || || | || Sbjct 3408012 ATGATCTCCTTCAC-TCTCTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAGGCA 3408070 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 ||||| ||||| || | |||||| ||||| ||| ||||| ||| ||||| || | || Sbjct 3408071 GGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAGACC 3408130 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 13781 ||||| | ||| |||| || | | | || || | || || || ||||||||||| || Sbjct 3408131 AGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAGAT 3408190 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 || || | || ||||| || | | ||||||||| | | | | ||||| | Sbjct 3408191 CCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCAAG 3408250 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA- 13900 ||| ||||| || | || || || || | ||| || ||||| | | | Sbjct 3408251 CCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTAAA 3408310 Query 13901 -ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 | ||| || |||| | ||| ||| || ||| || |||||||| | || |||||| Sbjct 3408311 CAGAAACTCTCTTTCTTTGGAGT-CTT-TAACGTAAGTGTCAATAAGGAGACTGTACATT 3408368 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| || || ||||| || || || || || ||||| ||||| | ||||||| Sbjct 3408369 TCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3408428 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || | ||||| || ||| || || || | || ||||| || || ||| Sbjct 3408429 TGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGCA 3408488 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 || || | | | | | |||||| ||| ||| || || ||| || ||| | Sbjct 3408489 AAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCTTCCCAGT-- 3408546 Query 14140 GCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 ||| || || || |||||||| | | ||| | |||||||| || | ||||| | Sbjct 3408547 GCTGAATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTTTCT 3408603 Query 14198 TATACAT 14204 ||||||| Sbjct 3408604 TATACAT 3408610 >seq136 Length=5168023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| |||||||||||||| ||||| || | || ||||| | ||| ||||| | Sbjct 4986658 CCTCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCT 4986717 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || |||| || || || ||||||||||| || || || || |||||||| | Sbjct 4986718 TGAGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGG 4986777 Query 13802 C 13802 | Sbjct 4986778 C 4986778 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13369 ||||| ||| |||| || | |||| ||| || | | | | || ||||| ||||| Sbjct 4985622 TAAAAGTCAGCATCCAAAGTAAAAGAATTCTC--CATGGGACTGGACATAACTCCCATCC 4985679 Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 | |||||||| | ||||| || ||||| ||||| || || |||||||| || ||||| | Sbjct 4985680 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4985739 Query 13430 CCATAAAATCGAATGGATTT 13449 |||| || |||||||||||| Sbjct 4985740 CCATGAAGTCGAATGGATTT 4985759 >seq51 Length=17238616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 11118 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11177 ||| | || || | || |||||||| |||| ||| || | | | |||| |||| | Sbjct 14409367 GTATCGTCCAATCCTTGAACTTCTTCTATTTCTGGGTAATAAATCTGTTCACAAATGAGC 14409426 Query 11178 TGTGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATA 11237 || || | |||||||||| |||| | | ||| | | ||| | | ||||| | || | Sbjct 14409427 TGGGCAATTCGATCGCCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACA 14409486 Query 11238 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 || |||| ||| || ||||||||||||||||| ||||| |||| | ||||||| Sbjct 14409487 ACGCCAACGTTTCCTCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATG 14409540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478563500599560