Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq136 84.2 3e-11 >seq1 Length=78885850 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 |||| ||| | |||||| | | ||||| |||||| || || || ||||| ||||||| Sbjct 12368124 AACTTTGGTATGCCATCATTGAGACTCAGACAGAGACAGGCACCCCATACATGCTCTACA 12368065 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 | ||| || |||| || |||||||||| || |||| || ||||| || ||||| Sbjct 12368064 AAGATTCCTATAATCAGAAGAGCAACCAACAGAACCTGGGAACAATCAAATGCAGCAATC 12368005 Query 97297 TGTGCACGGAAATTGTAGAGTA 97318 ||||||| ||||| |||||||| Sbjct 12368004 TGTGCACAGAAATAGTAGAGTA 12367983 >seq136 Length=5168023 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || || ||||| || || ||||||||||| ||| ||||||| | ||||| | Sbjct 4986783 TGGTCGCCTTTGCTGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCAATCTTCT 4986724 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||||| || ||||| ||||| || || || Sbjct 4986723 GGCTCAAGAAACGGGGACTAATGCCTGGCCTCAC 4986690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741020025758040