Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004615.1 Length=43604 Score E Sequences producing significant alignments: (Bits) Value seq371 529 5e-146 >seq371 Length=40469 Score = 529 bits (586), Expect = 5e-146 Identities = 876/1256 (70%), Gaps = 12/1256 (1%) Strand=Plus/Minus Query 10777 CAATTCGAAATTGAAAGTACAATAATCGCTACGCTACTTAAACAACCGGACGTATTAGAA 10836 |||| |||||||||||||| | ||||||| ||| | | |||| ||| | |||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 10837 AAGATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 10896 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 10897 GTAATGGACGTCGGAAAGATAGATCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 10956 | | || |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 10957 GAATTTTTAGATGCAGATACTATAACTAAACTTTACAACTCCGATTTCATTGGATATGGC 11016 ||| ||| | ||| || |||||| | || ||||| |||| ||||| || || Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 11017 TTCTTTGAACGTTATCAACAAGAATTATTGGAAAGTTATCAGCTCAACAAAGCTAACGAA 11076 |||||||| | ||||||||||| ||||| ||| ||||| | | ||||| || ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 11077 -TTGGTAACTGAGTTCAAACAACAACCTACGAACCAAAACTTT-AACAACTTGATTGATG 11134 || | | | | || |||||| | |||| | | ||||||| || | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC-ACCTGAAACTTTTAATGAAATGGTTGAGA 2012 Query 11135 AACTCAAGGATTTAAAAACAATTACTAACAAAAAAGAAGATGGAAC-CAAGAAGTTTGTT 11193 |||| || || |||| | || || | ||||||||| ||||| || ||| | | || | Sbjct 2011 AACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGCT 1953 Query 11194 GANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTAC 11253 | ||| || ||| ||| | | | | || || || Sbjct 1952 AAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATAT 1893 Query 11254 AAGCTAATGGATTACAAAATAGGGGGATTAGAACCATCACAATTAATCGTCATCGCAGCG 11313 || || ||||| || ||||| || || || || ||| ||||| || || || || || Sbjct 1892 AAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGCT 1833 Query 11314 CGTCCCTCAGTGGGTAAGACAGGTTTTGCATTAAACATGATGCTGAACATAGCACAAAAT 11373 ||||| || |||||||| || ||||||||||| |||||| |||||| ||| || | Sbjct 1832 CGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACAA 1773 Query 11374 GGATACAAAACATCTTTCTTTAGTCTCGAAACAACCGGCACATCGGTATTGAAACGTATG 11433 || || ||||||| ||||||||| | |||||||| || | | | || || | || Sbjct 1772 GGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATTG 1713 Query 11434 TTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGCC 11492 |||| || || |||||||| ||||||| || ||| | | || || || | |||| Sbjct 1712 CTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGCC 1654 Query 11493 GGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATAT 11552 |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | || Sbjct 1653 AAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACAT 1594 Query 11553 TTCTGATAAAAGTAATATCACACCGCAAGATGTGCGAGCGCAAGCAATGAGGCATTCAGA 11612 | ||| | || | | ||||| ||||| | |||| ||||| |||| |||| || Sbjct 1593 TAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTGA 1534 Query 11613 CAGGCAACAAGTTATTTTTATAGATTATCTTCAACTGATGGATACTGATGCGAAAGTTGA 11672 || | ||||||||| ||||| ||||| |||||| | ||||| || ||| | || ||||| Sbjct 1533 CAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTGA 1474 Query 11673 TAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAACGAGACAGG 11732 |||||| || ||||| |||||||||||||| ||||| || || || || || || ||||| Sbjct 1473 TAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAGG 1414 Query 11733 CGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGACAGGATAAAAG 11792 ||||| || ||| | ||||| ||| |||||||||| || || || ||| | |||||| | Sbjct 1413 AGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAACG 1354 Query 11793 ACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCGAT 11852 || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | ||||| Sbjct 1353 TCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGAT 1294 Query 11853 GCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACTGGCAAATC 11912 | | | || | |||||||| || | | || |||| || | || |||| ||||| Sbjct 1293 GATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAATC 1237 Query 11913 TATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTTGA 11972 ||| ||||||||||| |||||||| |||||||| || ||||| || | ||||||||||| Sbjct 1236 TATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTGA 1177 Query 11973 GTATTACAAGAAGACTCAGAGGTTTTTCACATGAATATAATGCAA-TTCAAAAGCT 12027 | ||||||||| || |||||||||||||||||| | || ||| ||||| |||| Sbjct 1176 ATTTTACAAGAAAACACAGAGGTTTTTCACATGAGTGTAGCACAATTTCAACAGCT 1121 Score = 159 bits (176), Expect = 1e-34 Identities = 310/457 (68%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 12416 ATTGCAAGCAACGA---TATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAAT 12468 |||| ||| ||||| |||||||| | ||| ||| |||| || | ||||||||||||| Sbjct 793 ATTG-AAGAAACGAATATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAAT 735 Query 12469 GCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTAC 12528 || |||||||||||||| ||||| || || ||||||||||| || || || || ||| Sbjct 734 GCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTAC 675 Query 12529 CAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAA 12582 | || |||||| | |||| || |||| | ||||| ||||| |||||| Sbjct 674 AAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT------ATCGAGATACAA 621 Query 12583 CCGAAATTTNNNNNNNNNNNNNNNNNNGGGAAACAAAGACCGATTACGTATATAGCCGAT 12642 |||| || | || |||||| | | | ||||| || || Sbjct 620 CCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGAC 561 Query 12643 TTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACT 12702 || | | ||||| | | || || ||||||| |||||||||||||| | |||||| Sbjct 560 TTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACA 501 Query 12703 GAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACG 12762 ||| || || | || |||||| |||| ||||||| ||| |||| || | || Sbjct 500 GAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACT 441 Query 12763 TGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTG 12822 |||||||||||||| ||||| ||||||||| |||| ||| | ||||| || || Sbjct 440 TGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAAC 381 Query 12823 AAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGAT 12859 || || ||||| || | || | || | || ||||| Sbjct 380 AAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Score = 93.3 bits (102), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 9342 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAG 9401 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 9402 ACCTGGCACATTATGAAGCAGTCGGCAGAGGCATGAACAGAAACAAAATGAATCACTACG 9461 | || ||||||||| ||||||| || | || |||||| ||| || | || | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 9462 ACAAACATGTGTTAGCACTGTGTAGACAACATCATAATGAACAGCACGCAATTGGCGTTA 9521 |||| | || |||| ||| ||| |||||||| || || |||| || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 9522 AGTCGTTTGA-TGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 9580 | | |||| | | | || ||||| || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 9581 AACAAAATGCTGAAAGGAG 9599 ||||||||||||||||||| Sbjct 3455 AACAAAATGCTGAAAGGAG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139404198856668