Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004617.1 Length=42722 Score E Sequences producing significant alignments: (Bits) Value seq371 170 5e-38 >seq371 Length=40469 Score = 170 bits (188), Expect = 5e-38 Identities = 260/371 (70%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 28745 TATCATTGGTAAAATTAAAGATCATATCGGCGGTATGGTAGATGCTATTAAAAAAGGACT 28804 ||| |||| ||||||||| ||| || || ||||||||| | |||| ||||| Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 28805 TAATAAATTAATTGAAGGCTTAAACTGGGTCGGTGGTAAGTTAGGTATGGATGAAATACC 28864 || ||| | || ||||| | |||||||| | || || | || ||||| || |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 28865 TAG------GTTACACACTGGTACAGAGCACACACATACTACTACAAGATTAGTTAAGAA 28918 || ||||||||| ||||| || || || |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 28919 CGGTAAGATTGCACGTGATACATTCGCTACAGTTGGGGATAAAGGACGTGGAAATGGTCC 28978 |||||||||||| || |||||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 28979 AAATGGTTTTAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTAATCACACCTAG 29038 |||||| || ||||||||||| | || || |||||| || ||||||||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 29039 TACAGACACTACTGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGTGCACAAACTTA 29098 | ||| || || || ||| | || |||| || | || ||||| || || || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 29099 TTCAATGTTAA 29109 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 141 bits (156), Expect = 3e-29 Identities = 300/450 (67%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 11785 ATATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAACGCTAAGAAAGTTGAGT 11840 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 11841 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 11896 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 11897 -AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAACTACAACCTAAATNNNNNNNNN 11954 | |||| || |||| | ||||| ||||| ||||||| | || Sbjct 658 GATTAATTATAGATGGTTATGACTAT------ATCGAGATACAACCGAGATATGAGCTAA 605 Query 11955 NNNNNNNNNNNGGGAAGCAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAGG 12014 || || ||| | | | ||||| || || || | | ||||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 12015 AAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATCA 12074 | | || || ||||||| |||||||||||||| | |||||| ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 12075 AAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAGCGC 12134 | |||||| |||| ||||||| ||| |||| || | || |||||||||||||| | Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 12135 CTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTGAAAGTCAGACGTAAAA 12194 |||| ||||||||| |||| ||| | ||||| || || || || ||||| || Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 12195 GAAAAAGAGAAATGAAGTGATTTAATGCAA 12224 | || | || | || |||||| ||| || Sbjct 364 GCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 102 bits (112), Expect = 2e-17 Identities = 175/251 (70%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 9110 GGCTACAATCAACCGCAACTGTGTAATTTGTGGAAAGCCTCACGCAGACCTAGCGCATTA 9169 |||||| ||||| | || || || || ||||| |||| | ||||| ||||| ||||| Sbjct 3678 GGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAGAGCTAGCACATTA 3622 Query 9170 TGAAGCAGTCGGCAGAGGAATGAACAGAAACAAAATGAATCACTACAACAAACATGTATT 9229 | ||||||| || | ||| |||||| ||| || | || | ||||| | ||||| Sbjct 3621 TCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTAACAACAAAGTATT 3562 Query 9230 AGCGTTATGTCGCGAACACCATAACCAGCAACATGCGATTGGCGTTAAGTCGTTTGA-TG 9288 || ||||| | || ||||| ||||||| | || ||| | | | |||| | | Sbjct 3561 AGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGGA-TAGTTTCAATA 3503 Query 9289 ATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTCAATAAAATGCTGA 9348 | || ||||| || | | || ||| | | ||||| ||||| || || |||||||||| Sbjct 3502 AGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTAAACAAAATGCTGA 3443 Query 9349 AAGGAGAGAAA 9359 |||||| |||| Sbjct 3442 AAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136581940595832