Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq16 109 4e-19 seq148 87.8 1e-12 seq35 87.8 1e-12 >seq16 Length=31725842 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| || || | |||||||||||| || ||||| ||||||||||| Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| || ||||| | |||| | ||| || || ||| Sbjct 21647085 AAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 21647144 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| |||||| ||||||| || || ||| || Sbjct 21647145 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 21647204 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || || ||||||||||||||||| ||||| || Sbjct 21647205 TCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq148 Length=4887613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | || || || || ||||| || |||||||| || Sbjct 4050774 CCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 4050833 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | |||||||| || | || | | || ||||| || Sbjct 4050834 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050893 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || || ||| ||| ||| | || |||||||| || ||| || Sbjct 4050894 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACT 4050953 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 |||| ||| ||||| || || ||||| || || || ||||||||||| ||||| Sbjct 4050954 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT-TTTGA 4051005 >seq35 Length=22943593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCG--CTTAGAATTCTCGCGTCTTCTAAT 15217 |||||||| ||| || ||||| ||||||||||| | || || || | ||||| | | Sbjct 21587379 ATGAAGGGGGGACTCCTTTTGAATGTTGTAATCAGACAAAGCATG-TC-CATCTTCCACT 21587322 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || || ||||| |||||| ||| || || ||||||||||| || || || Sbjct 21587321 TGCTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 21587262 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| || |||| ||||||| ||||| ||| || || | || ||||| || | | Sbjct 21587261 TTGGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTT 21587202 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATATT 15366 | ||||||||||||||||| || || || Sbjct 21587201 GCAAGAGTTTTTACAAAAATCTGTATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362160532944489