Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq148 87.8 2e-12 >seq148 Length=4887613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| || || ||||| ||||| || |||||||| || | ||| |||||| Sbjct 4050792 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 4050851 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||||| ||| | || |||||||| || || || | ||||||||| || Sbjct 4050852 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4050911 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||||| | ||| | ||| | |||||| ||| | ||| ||||| ||| Sbjct 4050912 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTG 4050971 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCTTAT--AAATGACAA 20231 || |||| || || || |||||||||| |||| | || | || ||||||||| Sbjct 4050972 CCAGTCAGGGTCTTCACGAAAATTTGCA-TTTTGACCTGTAATTAAAATGACAA 4051024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419565574082349