Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq26 237 1e-57 seq48 181 9e-41 >seq26 Length=26652979 Score = 237 bits (262), Expect = 1e-57 Identities = 613/921 (67%), Gaps = 31/921 (3%) Strand=Plus/Plus Query 12801 TTTAAAAATCAATATCTAGAG-AAAATACATCATCGTCCTTATTTGACATAACAGACATT 12859 ||||||| |||| ||| | || |||| | || ||| | | ||||||| ||| Sbjct 3407717 TTTAAAAGTCAACATCCAAAGCAAAAGAATTCTCCGTAGG-ACTGGACATAATTCCCATC 3407775 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 | ||||||||| ||||| || ||||| | ||| || |||||||| | |||||| Sbjct 3407776 CTCTGATATTCGTCTACTCTCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAAAATATGC 3407835 Query 12920 TCCATAAAATCGAAAGGATTTTTC----GAACAATAGTATTTTTTACACCCTAATTCTAG 12975 ||||| || ||||| ||||||| | ||| || || || | |||| | ||| || Sbjct 3407836 TCCATGAAGTCGAATGGATTTTCCACATGAAAAACCTCCTTGTTGA-ACCCCAGTTCCAG 3407894 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 | | |||||||| || || || |||||||| |||||||||| |||||||| || || Sbjct 3407895 CATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATCCCGAT 3407954 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | | ||||||| || || || | || | | || || | || | ||||| Sbjct 3407955 GAGCTC-ACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATTGATAAT 3408013 Query 13096 TATGTCTCTTATTACGTTCTCTAATG-GAGGATTTGAT----AGATGCTTAAACATCATA 13150 || || ||| || |||||| | |||| |||| || ||||| ||||||| Sbjct 3408014 GATCTC-CTTC--AC--TCTCTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAGG 3408068 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| ||||||||||| || || ||||| || | || ||| ||||| || ||| Sbjct 3408069 CAGGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAGA 3408128 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| | || |||| || | | | || || | ||||| ||||| ||||| || Sbjct 3408129 CCAGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAG 3408188 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || ||||| | || ||||| || | || | ||| ||||| || | ||| | | Sbjct 3408189 ATCCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCA 3408248 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 | ||| |||||||| || || | || | |||| ||| | || || | | || Sbjct 3408249 AGCCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTA 3408308 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || | | | | | |||| || |||| || ||||| || || | | || |||||| Sbjct 3408309 AACAGAAACTCTCTTTCTTTGGAGTCTTTAACGTAAGTGTCAATAAGGAGACTGTACATT 3408368 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || ||||| ||||||||||| || |||||||| ||||| ||||| | || |||| | | Sbjct 3408369 TCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3408428 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 |||||||| | ||||| || | | || ||||| | ||| || || || |||||| Sbjct 3408429 TGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGCA 3408488 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttC-----GTTTTCTGACAACTTTAACC 13625 || |||| || | || |||||| | | | || | ||| | ||| || Sbjct 3408489 AAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTT---AGTGCTT--CCC 3408543 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | | ||| ||||| || | || || ||||| | |||||||| || || | || | Sbjct 3408544 AGTGCTGAATGTCTTTGGAAAGAT---CCACCTCAGCCGTCCAAAAGGAGGCTTCGGCTT 3408600 Query 13686 TCTTATACATCATCCATATAT 13706 ||||||||||| ||| |||| Sbjct 3408601 TCTTATACATCTGCCAAATAT 3408621 >seq48 Length=20532749 Score = 181 bits (200), Expect = 9e-41 Identities = 594/914 (65%), Gaps = 22/914 (2%) Strand=Plus/Minus Query 12798 AACTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACA 12857 || |||| ||||| ||| | || | |||| ||| | | | || |||||| | | Sbjct 14858739 AAGTTTACAAATCTGCATCCAAAGTGATGACATTATCTTTGCTTTCTGCCATAACTGTGA 14858680 Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 | |||||| || |||| ||| ||||| || |||||||| |||||||| ||||||| Sbjct 14858679 AATGTTGATACTCTGGCACTCATTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATAT 14858620 Query 12918 TTTCCATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGT 12976 |||||||||||||||| ||||||| || || | ||| | | || | ||| | Sbjct 14858619 TTTCCATAAAATCGAAGGGATTTTCTCCCTGAAAAACCTTTGAGA-ATCCAAGTTCCACC 14858561 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||||||||| | |||||||| || ||||| ||||| ||| |||||||||| | || Sbjct 14858560 AGCAATCTGTCCACCACAAACTCAATATACTGCTTCATCAAAACACAGTTCATCCTGATC 14858501 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | | ||| |||||||| ||||| | | || || || || || || | Sbjct 14858500 AGACCGAATAGCAGGGCTTCTGTCAAAAACTCCTACTCGATTCTGACAGCATCTATGATG 14858441 Query 13097 ATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 || || | || || || ||| | || || || || ||||||| || || Sbjct 14858440 ATCTCCTGGACCCAGTCCTCCTCATGCTTG-TTCATTAAATACTGGAACATCAGGCAGGC 14858382 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| |||||||| ||||| |||||||| || | || || || || || || Sbjct 14858381 AAATTCACAGTGAAATCCCTCATCTCTGCTGA----------GGAGAAGGTGAGGCCTGG 14858332 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| || |||| || || | ||| || || || |||| || || | || || | ||| Sbjct 14858331 CATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAAGAACACTCC 14858272 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCC 13334 ||| |||||||| || || | | ||| || | | | | | ||| ||| |||||| Sbjct 14858271 TTCCACTGCTGCGAAGGCCACCTCCCTCTCCCTGAAAGCA-GACTTTCTGTCTGCTATCC 14858213 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 || |||||||| |||||||| ||||| | | ||| |||| ||| | ||||||| Sbjct 14858212 ACCGCAAGGCCCAGTCTGCTTTTTTCTTAACATATTCCATTGTTTCAATTCCATTAAATA 14858153 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 || | | | | || |||| || |||||||| | |||||||| | || Sbjct 14858152 AAAATTCCCTCTTCTCGAAGTCTCTGAT----GTATCTATGAGCAAGCTATATGTCTCAT 14858097 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | |||| || | || || ||||| || || || || | || || | ||||| | Sbjct 14858096 AGTGAACGTTCTTGATGAGGATCTGGAAGCCGTAGAAGCAGCAAGGTTCAGGGACCTGCA 14858037 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | || ||| | || |||| || || || || ||||| || ||||||| Sbjct 14858036 CTTCCTGGCTGAAGTGCTCTACCAAATTTTTATTTACAATTCCATCACTGGCTGCAAAAA 14857977 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634 || | ||||| ||||| | || || | | | ||| ||| | || | Sbjct 14857976 CGGCTAAGATGTGAGAGATAAAATACTTCTCATCGGGTTTGAGCTTGTTCCAGTGAGGCA 14857917 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA-AGCAACAGCCTTCTTATAC 13693 ||| ||||||| || ||||| || | |||||||| || | | || ||| |||||| Sbjct 14857916 GATCCTTTGATAGGTCAACCTCTTCTGCTGTCCAAAAGGACACCTGCA-CCTGCTTATAA 14857858 Query 13694 ATCATCCATATATC 13707 | | |||| ||||| Sbjct 14857857 AGCTTCCAGATATC 14857844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430960186763058