Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq78 125 6e-24 seq21 89.7 5e-13 >seq78 Length=10179728 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||| ||| ||| ||||||||| Sbjct 4688681 GGTTACCTGGGCTGCCAAGCCTTGTCGGAGATGATCCAGTTCTACCTGGTGGAGGTGATG 4688740 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||||| ||||||| || |||||||| ||||||| ||||| ||||| |||||| Sbjct 4688741 CCCAAGGCGGAGAATCACGACCCAGACATCAAGCAGCACGTGAACTCCCTGGGGGAAAAG 4688800 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 ||||| || || | || | ||||| ||||| Sbjct 4688801 CTCAAGACTCTCAGGCTGCAGCTGCGGCGCTG 4688832 >seq21 Length=28505965 Score = 89.7 bits (98), Expect = 5e-13 Identities = 173/254 (68%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 ||||| |||||| | | ||| |||| | | |||||| | | ||| | || || Sbjct 6514308 TCGGTACTGTCCAATCCTTGAACTTCTTCTATTTCTGGGTAATAAGTCCGTCCACACATG 6514367 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || || || |||| ||||| | || || || ||||||||| Sbjct 6514368 AGCTGGGCAATTCGATCGCCTTTTTTAAT-TCAAACTTTTCTTTGCCAAAATTAAACAGC 6514426 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || | || ||||| |||| || ||| | || || || ||||| || || || || ||| Sbjct 6514427 ACAGCGCCAACATTTCCTCTATAATCTCCATCTATGACTCCAGCTCCAACATCTATGAAG 6514486 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 |||||| | || | ||| || ||||| |||| | ||| ||| | ||||| || || Sbjct 6514487 TGTTTGGCAGCCAAGCCAGATCGTGGAGCTACTCTTCCATAGGACCCAGGAGGAAGAGCA 6514546 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 6514547 ATCTGAATGTCCGT 6514560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447726730794480