Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq78 114 1e-20 >seq78 Length=10179728 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||||||||| | ||||| ||||| |||| Sbjct 4688690 GGCTGCCAAGCCTTGTCGGAGATGATCCAGTTCTACCTGGTGGAGGTGATGCCCAAGGCG 4688749 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || ||||||| || ||||| || | ||||| || |||||||| |||||||| ||||| Sbjct 4688750 GAGAATCACGACCCAGACATCAAGCAGCACGTGAACTCCCTGGGGGAAAAGCTCAAGACT 4688809 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | || || | ||||| ||||| Sbjct 4688810 CTCAGGCTGCAGCTGCGGCGCTG 4688832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| ||||| | ||| || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 4690872 AGCTCCAGGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4690931 Query 127439 TCGAGACTTACATG 127452 |||| | |||||| Sbjct 4690932 TCGAAGCCTACATG 4690945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430032234593048