Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005356.1 Length=41708 Score E Sequences producing significant alignments: (Bits) Value seq371 235 1e-57 >seq371 Length=40469 Score = 235 bits (260), Expect = 1e-57 Identities = 302/414 (73%), Gaps = 18/414 (4%) Strand=Plus/Minus Query 34796 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 34855 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 34856 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAATTATGATC 34909 | ||||| || ||| | || |||||| | |||| || |||| |||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGG------TTATGACT 635 Query 34910 ATATCGAAATACAACCGAAATTCGAATTATTACCAAAACTAGATAAACAACGAAAGATTG 34969 ||||||| |||||||||| || || || |||| ||| | | ||||||||| || | || Sbjct 634 ATATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 34970 AATATATTGCAGACTTCGCGTTAT---ATCTCGATGGCAAACTGATTGAAGTTATCGACA 35026 |||||||||||||||| || ||| || ||| ||| |||||||||| || ||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGA---CAAGTTGATTGAAGTCATAGACG 518 Query 35027 TTAAAGGTATGCCAACCGAAGTAGCAAAACTTAAAGCTAAGATTTTCAGACATAAATACA 35086 ||||||| ||| | || ||| || || | || || ||| | || ||| || ||| Sbjct 517 TTAAAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATC 458 Query 35087 GAAACATAAAACTCAATTGGATATGTAAAGCGCCTAAGTATACAGGTAAAACATGGATTA 35146 || ||||||| | ||||||||||||||| |||||||| ||||||||| ||| | | Sbjct 457 CCAATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAA 398 Query 35147 CGTACGAGGAATTAATTAAAGCAAGACGAGAACGCAAAAGAGAAATGAAGTGAT 35200 |||| || ||||| | || | ||||| |||||||| | || | || ||||| Sbjct 397 CGTATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Score = 199 bits (220), Expect = 1e-46 Identities = 268/371 (72%), Gaps = 8/371 (2%) Strand=Plus/Minus Query 11139 ATTATAGATAAGATTAAAAGTCATATCGGCGGTATGGTAAGCGCTATTAAAAAA-GGACT 11197 ||||| || || ||||||||||| || || |||||| | | |||||| ||||| Sbjct 28626 ATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTA-GATAAAGTAAAAAGTGGACT 28568 Query 11198 TAATAAATTAATCGACGGTTTAAACTGGGTCGGTGGTAAGTTGGGAATGGATAAAATACC 11257 || ||| | ||||| ||| | |||||||| | || || | |||||||| ||| |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 11258 TAA------GTTACACACTGGTACAGAGCACACACATACTACTACAAGATTAGTTAAGAA 11311 ||| ||||||||| ||||| || || || |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 11312 CGGTAAGATTGCACGTGACACATTCGCTACAGTTGGGGATAAGGGACGCGGAAATGGTCC 11371 |||||||||||| ||||||||||| || || || |||| || || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 11372 AAATGGTTTTAGAAATGAAATGATTGAATTCCCTAACGGTAAACGTGTAATCACACCTAA 11431 |||||| || ||||||||||| | || ||||||||| || |||||||||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 11432 TACAGATACTACCGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGTGCACAAACTTA 11491 | |||||| || || ||| | || |||| || | || ||||| || || || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 11492 TTCAATGTTAA 11502 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133337303547660