Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq17 113 3e-20 seq41 100 2e-16 >seq17 Length=29327949 Score = 113 bits (124), Expect = 3e-20 Identities = 325/502 (65%), Gaps = 31/502 (6%) Strand=Plus/Plus Query 25281 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 25340 || ||||| |||| | || || ||||| || | ||| || ||||| || | || Sbjct 14730577 ACAGCCATTTCCATCTTAATAGCAGGATGTGGATTGTACCCTTCCAGCTGAAAGTGTTCA 14730636 Query 25341 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 25400 || | ||||| || | | |||| || | | || || || | ||||| |||| Sbjct 14730637 GCTGTGAAGTCATCAATGGTCTCAACTGTTCGAAGGATTCTGAGCTTTGGAAAAGGTC-- 14730694 Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 || || | || |||||||| |||||||| || | ||||| |||||| | || || ||| Sbjct 14730695 GGTTCTCGCTGAAGCTGAGTTTTCAGCGGCTCAATGTGATTCAGGTAAATATGTGCATCT 14730754 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 | || ||| || ||||| || || || | | || || || | || | |||||| ||| Sbjct 14730755 CTCAAAGTATGTACAAAGTCACCTGGCTGCGGGCCAGTGACATGGGCGACCATGTAGGTG 14730814 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || || |||||||||||| || | ||||||| ||| || | ||| Sbjct 14730815 AGCAGGGCGTTGCTGGCGATGTT---------GCCCAGGCCCATGT-CCCTGGAACGCTG 14730864 Query 25581 GTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGG 25640 ||| ||||| || || ||||| ||| |||||| ||||| || | || || ||| || Sbjct 14730865 GTACAGCTGGCAGGACGGCTCTCCGTTCACCACGTAGAACTGGCAGAGGGCGTGGCAGGG 14730924 Query 25641 AGGAAGAGCTATAAG---------GCCC----------AAGTCTTTAGGGTTCCAGGCGC 25681 ||| || | || || || | | |||||| ||||||| || | Sbjct 14730925 AGGCAGCACCATCAGAGGGAGGTAGCACCATCAGAGGGAGGTCTTTCAGGTTCCAAGCAC 14730984 Query 25682 ACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCT 25741 ||| |||||| | ||||| || |||||| |||| || | || ||||||| Sbjct 14730985 ACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTTTCTGCAGCT 14731044 Query 25742 GATCCACCCCCATCCCCGAGTA 25763 | ||||| || |||||||| Sbjct 14731045 GGTCCACTTCCTGACCCGAGTA 14731066 >seq41 Length=20498451 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||||||||| || ||||| || || ||||| Sbjct 11142398 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTC 11142339 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | |||| ||||||| ||| |||||||| || Sbjct 11142338 CCCTTCCTGGCGGCTGGAAAACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCATC 11142279 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || ||||| || || ||||||| ||||||||| || Sbjct 11142278 CCAGATCTTCACGCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 11142231 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 11146897 AGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 11146838 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| |||| || | |||||| ||||| || || |||||| ||| Sbjct 11146837 ACGCCCAGGCCCATGT-CCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCAC 11146779 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| || | || | ||| ||||| || || || || Sbjct 11146778 CACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 11146734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340120068989217