Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq78 120 3e-22 >seq78 Length=10179728 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||| ||||||| ||| || | Sbjct 4688679 AGGGTTACCTGGGCTGCCAAGCCTTGTCGGAGATGATCCAGTTCTACCTGGTGGAGGTGA 4688738 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||| || ||||| ||||| || ||| ||||||||||||| ||||| || | Sbjct 4688739 TGCCCAAGGCGGAGAATCACGACCCAGACATCAAGCAGCACGTGAACTCCCTGGGGGAAA 4688798 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 4688799 AGCTCAAGACTCTCAGGCT 4688817 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| ||||| ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 4690872 AGCTCCAGGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4690931 Query 10419 TAGAAGCATACATGAC 10434 | ||||| |||||||| Sbjct 4690932 TCGAAGCCTACATGAC 4690947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547350264167040