Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq85 179 5e-40 seq31 109 8e-19 >seq85 Length=11339561 Score = 179 bits (198), Expect = 5e-40 Identities = 222/304 (73%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 |||| | ||||| | || ||||| || | || || | |||| ||||||||||| Sbjct 6903619 GGAATACTGAACGATGTGAAAGGACAACCCCTCACATTAGTGCAGATGAGAGACTGGATG 6903560 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| | |||| |||| ||| || || ||||| || || || || || |||||||| Sbjct 6903559 GAAGCAGTGTTGATGATCTTAAAACCTACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAG 6903500 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 ||||| |||||| || ||||||| ||||| | ||| |||||||| |||| || Sbjct 6903499 TGTGGGGAACAGATGGGATTACCCATGAGTCCTTTCAAGGAGAACGGAGCTCCCATTTCC 6903440 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| ||||||||||||| |||| || || ||||||||||||| | ||| ||| Sbjct 6903439 ACCATGGTCTCACCGAAGATAGCGTCTGGCCGAGGCTTTTCCACCAGCAGGGCGGGATAC 6903380 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | ||||||||| || ||||| ||||| ||||| | || ||||| |||||||| ||| Sbjct 6903379 AGCTCCACAGCATCAATGTCACCGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCT 6903320 Query 8972 CCTG 8975 |||| Sbjct 6903319 CCTG 6903316 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| | || ||| ||| || ||||| || |||| || || ||||||||| Sbjct 6901995 GTCTGGAACAGACGCTCATCATCCCACTCCGGATGCTCCTGTTTAAGCACGTCGCACACT 6901936 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct 6901935 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGCACTAGGCCGAAG 6901876 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | |||| | || || | ||| || |||||||| || Sbjct 6901875 ACCTCCTGGCCCACGGCGAAGCGCAGGTGCTCAGGGGTGTGGGGTGGGTAGATCATCTGT 6901816 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||||| ||||||||| | ||| || ||||| || || ||||| |||| Sbjct 6901815 ACCTGGGTATCTTTGACTGTGGGAGGGTACATCTCTCCATCAATTATCT 6901767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| || || || | | || ||||| || | | | | Sbjct 6900252 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCCGCCACAGGAGGGAGGACTCGGGTG 6900193 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| || || ||||| |||||||||||| ||| | || |||| |||||| | Sbjct 6900192 TAGTAGGAAAGGTTAGAGAAGGCTTCCCAGCTTCTGTAGCCATAATCCGAGTTGTAAGTT 6900133 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| ||||| ||||| Sbjct 6900132 GGTGGGCTGTCAATCAAATGTGATCTGGCTGAA 6900100 >seq31 Length=23434821 Score = 109 bits (120), Expect = 8e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| || |||||||| | || || |||||| ||| Sbjct 12918151 AAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 12918210 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||| || ||||||||||| |||||||| | ||||| || ||||| || |||||| Sbjct 12918211 CCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCAAACTCGATCATACTCTCCCCAAAGATG 12918270 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 ||||| || || ||||| | | || || | ||| ||||| | || || |||||| Sbjct 12918271 GCGTTTGGTAGGCATTTTTCAAGAAGCAACCCTGGGTAGAACTCTAAGGCATCAATGTCT 12918330 Query 8933 CCGTA 8937 || || Sbjct 12918331 CCATA 12918335 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || |||||||| || |||| | || |||||| | || || || |||| | |||| Sbjct 12927870 GTACTTACCCCGTGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTCT 12927927 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||| |||||||| | Sbjct 12927928 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTTGTGCCCTGAG 12927987 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 |||| || |||| |||||| Sbjct 12927988 GATCAGGGATGAACTTCCTCC 12928008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708487345607760