Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq16 114 1e-20 seq148 104 2e-17 seq40 87.8 2e-12 seq12 86.0 6e-12 >seq16 Length=31725842 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 |||| |||||| | || | || || |||||||| | ||| ||||| || ||| Sbjct 21647034 AATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCT 21647093 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| ||||| || || || ||||||| | ||||||||||| |||||||| ||||| Sbjct 21647094 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 21647153 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 || || | || || || || || | | |||||| | | | || || || | |||| Sbjct 21647154 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 21647213 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||| ||||| |||||||| Sbjct 21647214 ATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq148 Length=4887613 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| ||| || || || || | || ||||| Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || || ||||||| | || ||||| || ||||| Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || | | || ||| | | || || Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||||||||||||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050772 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | || | ||||| ||| || ||||| || | || || || Sbjct 4050318 CCACCCCTCAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAA 4050377 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || ||||| Sbjct 4050378 AGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050437 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || | | || ||| | || || Sbjct 4050438 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACC 4050497 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||||||||||||||| Sbjct 4050498 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 >seq40 Length=22651954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| ||| |||| || | | ||||| || || || || || || || Sbjct 7366553 ATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTT 7366612 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || ||||| ||| |||||| | | || || || | ||||| Sbjct 7366613 GTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGAT 7366672 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||| ||||||||||| Sbjct 7366673 GGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq12 Length=34595640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || ||||| | ||||| ||||| || || || ||||| || || Sbjct 22518595 CCACCTCGCAGGCGAAACACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAG 22518536 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | | ||||||||||||| | ||| |||| || | | ||||| || || || Sbjct 22518535 AGAGTTTGGCCATCCTCCAGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 22518476 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || |||| || |||||| | | || || Sbjct 22518475 ATGCCCTCCTTGTCTTGGATTTTGGCTCTGACATTCTTGATGGTGTCACTGAGCTCCACC 22518416 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || | |||| ||||||||||| Sbjct 22518415 TCGAGGGTGATGGTCTTGCCCGTCAGGATCCTCACGAAGATCTGCAT 22518369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448267502206440