Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq27 154 2e-33 seq43 131 3e-26 seq23 104 4e-18 >seq27 Length=25514964 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || ||||||||||| ||||||||||| || || Sbjct 701631 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAAGGCATCACCAAGCCCGCCAT 701690 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| ||||||| | ||||||| |||| Sbjct 701691 CCGCCGCCTGGCCCGCCGCGGCGGTGTCAAGCGCATCTCTGGCCTCATCTATGAGGAGAC 701750 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||| || || ||| || || Sbjct 701751 GCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACGGA 701810 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 701811 GCACGCTAAGCGCAAGACGGTCACGGCCATGGACGTAGTCTACGCGCTCAAGCGCCAGGG 701870 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| | ||| Sbjct 701871 ACGCACGCTCTACGGCTTCGGAGGCTAA 701898 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 706583 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 706524 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 706523 CCGTCGCCTGGCACGCCGCGGCGGTGTCAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 706464 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||| || || ||| || || Sbjct 706463 GCGCGGGGTACTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACGGA 706404 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | |||||||| | ||||| || || Sbjct 706403 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTATGCCCTCAAACGCCAGGG 706344 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || ||||| Sbjct 706343 ACGCACGCTCTACGGCTTTGG 706323 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 878289 CGCCAAGCGCCACCGCAAGGTGCTACGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 878348 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| | || || | |||| || |||| Sbjct 878349 CCGCCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATTTCCGGCCTTATCTACGAGGAGAC 878408 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || ||| || ||| || || Sbjct 878409 GCGCGGAGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGA 878468 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | |||||||| | || || || || Sbjct 878469 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGG 878528 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 878529 ACGCACGCTCTACGGCTTCGG 878549 Score = 122 bits (134), Expect = 1e-23 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | | || || || |||||||| || ||||||||||| || || Sbjct 24178252 GCTAAGCGCCACCGTA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 24178310 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| | || || | ||||||| |||| Sbjct 24178311 CCGCCGCCTGGCGCGGCGCGGCGGTGTCAAGCGCATTTCCGGCCTTATCTATGAGGAGAC 24178370 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| || |||| ||| || | || || || Sbjct 24178371 GCGCGGGGTGCTGAAGGTCTTCCTGGAGAATGTGATCCGTGACGCCGTTACTTACACGGA 24178430 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 24178431 GCACGCCAAGCGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 24178490 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 24178491 CCGCACGCTGTACGGCTTCGG 24178511 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 745487 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 745546 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || ||||| |||||||| | ||||| | |||| || |||| Sbjct 745547 CCGCCGCCTAGCCCGCCGCGGTGGTGTCAAGCGCATTTCTGGCCTCATCTACGAGGAGAC 745606 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || ||||||| ||| ||| |||| || || || ||| || || Sbjct 745607 GCGCGGGGTGCTAAAAGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 745666 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 745667 GCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 745726 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 745727 ACGCACGCTCTACGGCTTCGG 745747 Score = 114 bits (126), Expect = 2e-21 Identities = 184/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 817834 CGCTAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 817776 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| | ||||| | |||| || |||| Sbjct 817775 TCCGCCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATTTCTGGCCTCATCTACGAGGAGA 817716 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| |||| || | | ||| || | || || || ||| || | Sbjct 817715 CACGCGGGGTGCTGAAGGTCTTTCTGGAAAACGTGATTCGCGACGCCGTCACCTACACGG 817656 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || ||||||| | ||||| || | || || || | Sbjct 817655 AGCACGCCAAGCGCAAGACGGTTACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 817596 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | | || || || || Sbjct 817595 GACGCACGCTCTACGGCTTCGG 817574 Score = 95.1 bits (104), Expect = 2e-15 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 || ||||| || ||||||||||| || ||| | || ||||| || || | || |||||| Sbjct 726142 AATATCCAGGGCATCACCAAGCCCGCCATCAGCCGCCTGGCCCGCCGCAGCGGCGTCAAG 726083 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCC----TCAA 16578 || ||||||| | ||| ||||||| |||| || ||||| |||||| | | Sbjct 726082 CGCATCTCTGGCCTCATCTGCGAAGAGACCCGTGGGGTGCTGAAGGTCTTCCGGGATGGA 726023 Query 16579 GACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTC 16638 |||| | |||| ||| || |||| | |||||||| || || |||| ||||| | Sbjct 726022 GACCATGATCCGTGACATCGTCATCTATGCAGAGCACGCCAAGCGCGAGACGGTCACGGC 725963 Query 16639 CATGGATATCGTCTA 16653 |||||| | ||||| Sbjct 725962 CATGGACGTGGTCTA 725948 >seq43 Length=20040566 Score = 131 bits (144), Expect = 3e-26 Identities = 187/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| |||| | ||| | || ||||| ||||| || || || ||||| || || Sbjct 17624723 GCTAAGCGTCACCGCAAAGTCT-TGCGGGATAATATCCAGGGTATTACGAAGCCCGCGAT 17624781 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || || || || |||||||| |||| || | |||| || || | Sbjct 17624782 CCGGCGTCTCGCCCGCCGCGGCGGTGTCAAGCGGATCTCCGGGCTCATCTACGAGGAAAC 17624841 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| |||| || | | ||| |||| || || || || ||||| Sbjct 17624842 CCGCGGTGTGCTGAAGGTCTTTCTTGAAAACGTCATCCGCGACGCCGTCACTTACACCGA 17624901 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| | ||||| | ||||| || | || || || || Sbjct 17624902 GCACGCCAAGCGCAAGACTGTCACCGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 17624961 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 17624962 CCGCACTCTGTACGGCTTTGG 17624982 >seq23 Length=27621139 Score = 104 bits (114), Expect = 4e-18 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | |||| || || || ||||| || || || ||||| || | Sbjct 23249565 CGCCAAGCGCCACCGGA-AGGTCTTGCGGGACAATATCCAGGGCATTACGAAGCCCGCGA 23249623 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| || || || || || |||||||| | ||||| | | || || |||| Sbjct 23249624 TTCGGCGTCTCGCCCGCCGCGGGGGCGTCAAGCGCATTTCTGGGCTCATTTACGAGGAGA 23249683 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | || | ||||| ||| ||| |||| ||| || | ||| |||| Sbjct 23249684 CCCGGGGAGTGCTCAAAGTGTTCCTGGAGAACGTGATCCGTGACGCAGTGACCTACACCG 23249743 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || ||||| |||| || || | Sbjct 23249744 AGCACGCCAAGCGCAAGACCGTCACTGCCATGGACGTGGTGTATGCGCTGAAGCGCCAGG 23249803 Query 16671 GCCG 16674 |||| Sbjct 23249804 GCCG 23249807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071333395697