Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq48 98.7 1e-15 >seq48 Length=20532749 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/266 (69%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | || |||||||||| ||| || ||||| | | | Sbjct 14858736 TTTACAAATCTGCATCCAAAGTGATGACATTATCTTTGCTTTCTGCCATAACTGTGAAAT 14858677 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || |||| ||| || || |||||||| || ||||| || || ||| || Sbjct 14858676 GTTGATACTCTGGCACTCATTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTT 14858617 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA-CCCAGTTCTGATAAT 21304 |||||||||| || |||||||| | ||| | || | | || || ||||| | Sbjct 14858616 CCATAAAATCGAAGGGATTTTCTCCCTGAAAAACCTT-TGAGAATCCAAGTTCCACCAGC 14858558 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 ||||| || | ||||| || ||||| || ||| || |||| ||||| | ||||| Sbjct 14858557 AATCTGTCCACCACAAACTCAATATACTGCTTCATCAAAACACAGTTCATCCTGATCAGA 14858498 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAA 21390 | | || |||| ||||||||| Sbjct 14858497 CCGAATAGCAGGGCTTCTGTCAAAAA 14858472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531872682393960