Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007047.1 Length=39620 Score E Sequences producing significant alignments: (Bits) Value seq371 260 3e-65 >seq371 Length=40469 Score = 260 bits (288), Expect = 3e-65 Identities = 325/441 (74%), Gaps = 16/441 (4%) Strand=Plus/Minus Query 34290 ATATTTGATAT-TTAGAGG--TGGCACAGT-GAGTAAATACAACGCTAAGAAAGTTGAGT 34345 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 34346 ACAAAGGGATTGTATTTGATAGCAAAGTAGAATGTGAATATTACCAATATTTAGAA---- 34401 | ||||| || || ||||||||||| |||||||| || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 34402 -AGTAAT-ATGAATGGCACTAATTATGATCATATCGAAATACAACCGAAATTTGAATTAT 34459 | |||| || |||| |||||| ||||||| |||||||||| || ||| || Sbjct 658 GATTAATTATAGATGG------TTATGACTATATCGAGATACAACCGAGATATGAGCTAA 605 Query 34460 TACCAAAATTAGATAAACAACGAAAGATTGAATATATTGCAGACTTCGCGTTATATCTCA 34519 |||| ||||| | ||||||||| || | |||||||||||||||||| || ||| | Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 34520 ATGGCAAACTGATTGAAGTTATCGACATTAAAGGTATGCCAACCGAAGTAGCAAAACTTA 34579 | | ||| |||||||||| || ||| ||||||| ||| | || ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 34580 AAGCTAAGATTTTCAGACATAAATACAGAACCATAAAACTCAATTGGATATGTAAAGCAC 34639 | || ||| | || ||| || ||| | ||||||| | ||||||||||||||||| Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 34640 CTAAGTATACAGGTAAAACATGGATTACGTACGAGGAATTAATTAAAGCAAGACGAGAAC 34699 ||||||| ||||||||| ||| | ||||| || ||||| | || | ||||| |||| Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 34700 GCAAAAGAGAAATGAAGTGAT 34720 |||| | || | || ||||| Sbjct 364 GCAAGAAAGCTAAGAGGTGAT 344 Score = 107 bits (118), Expect = 5e-19 Identities = 181/259 (70%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 32068 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAG 32127 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 32128 ACCTGGCACATTATGAAGCAGTCGGCAGAGGCATGAACAGAAACAAGATGAACCACTATG 32187 | || ||||||||| ||||||| || | || |||||| |||||| | || | | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 32188 ACAAACATGTATTAGCGCTATGTCGCGAACATCATAACGAGCAACATGCGATTGGCGTTA 32247 |||| | ||||||| |||||| | |||||||| |||||||| | || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 32248 AGTCGTTTGA-TGATAAATACCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 32306 | | |||| | | | || || || || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 32307 AATAAAATGCTGAAAGGAG 32325 || |||||||||||||||| Sbjct 3455 AACAAAATGCTGAAAGGAG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126656039093436