Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007050.1 Length=44283 Score E Sequences producing significant alignments: (Bits) Value seq371 379 6e-101 >seq371 Length=40469 Score = 379 bits (420), Expect = 6e-101 Identities = 553/774 (71%), Gaps = 12/774 (2%) Strand=Plus/Minus Query 35453 TAGAGCTAGGGAGTTTAACGGTATGGAAGAAGCGAGTATCAATATGGATTATCACAAAGC 35512 |||||| || |||||||||||| | || |||| || || ||||| ||||||| || Sbjct 5240 TAGAGCAAGAGAGTTTAACGGTTTAGATGAAGTGACAATTGATATGTCATATCACATGGC 5181 Query 35513 AATCAAGAAAACAGTGACAGAAACTATTGAGTACGAGGAGGTAGAACATGACTGAACAAA 35572 || || | ||| | |||| | | || |||||| |||| |||| |||| ||| Sbjct 5180 GATTAAACATACACATATAGAAGAAGATAAATATGAGGAGTTAGATTATGAGTGAAAAAA 5121 Query 35573 CATTATTTGAACAGTTGAACAGTAAAAACGTGAATGATCATACAGAACaaaaaaaTGGAT 35632 |||||||||||||||| |||| | ||||| ||||||| ||| | || ||||| | Sbjct 5120 CATTATTTGAACAGTTAAACACAATTAACGTATCTGATCATGTTGAAAAGAAGAATGGCT 5061 Query 35633 -TAACTTATCTAGCATGGTCATATGCACACCAAGAGCTGAAAAAGATTGACCCAAACTAC 35691 ||||| || |||| ||| || ||||||| || | || ||||| ||||||| ||||| Sbjct 5060 ATAACT-ATTTAGCTTGGACACATGCACATGAACAACTTAAAAATGTTGACCCCAACTAT 5002 Query 35692 ACAGTAAAAGTACACGAGTTTCCACATCCAGATATTAACACAGAA--AATTATTTTGTAC 35749 | |||| |||| ||||||||||| || ||||| | || | | || ||||| |||| Sbjct 5001 GAAATAAAGATACATGAGTTTCCACACCCGGATAT-AGCAAATGACCAAGTATTT-GTAC 4944 Query 35750 CTTATTTGGCTACACCAGAAGGCTATTTTGTACAGGTATCTGTGACTGTGAAAGATAGTA 35809 ||||| | || || |||||||| ||||||||| | ||||| | | | |||| || || Sbjct 4943 CTTATCTAGCAACTCCAGAAGGTTATTTTGTAAAAGTATCAATCATATTAAAAGGTATTA 4884 Query 35810 CAGAGACTGAGTGGCTTCCAGTATTGGACTTTAGAAATAAATCGCTTGCTAAAGGTAGTG 35869 | || | || ||| | |||||||| ||||||| ||| || ||| | || ||||| | Sbjct 4883 CCGAATCAGAATGGTTACCAGTATTAGACTTTAAAAACAAGTCGTTAGCGAAAGGGCAAG 4824 Query 35870 CAACAACTTTCGATATTAACAAAGCGCAAAAACGATGTTTTGTTAAAGCTTCGGCTTTAC 35929 |||| || |||||||| || ||||| |||||||| || ||||||||||| | || |||| Sbjct 4823 CAACTACATTCGATATCAATAAAGCTCAAAAACGTTGCTTTGTTAAAGCAGCAGCATTAC 4764 Query 35930 ACGGTTTAGGCTTATATATCTACAACGGCGAGGAACTACCAAGTGCAAGTGACAACGATA 35989 |||| ||||| |||| ||||||||| | || ||| |||| | ||| ||| | ||| Sbjct 4763 ACGGCTTAGGTCTATACATCTACAACCGTGAAGAATTACCGAATGCTAGTAGTGAAGATG 4704 Query 35990 TTACAGAATTAGAAGAGCGTATCAATCAGTTCGTGAACTTATCTCAAGAAAAAGGGCGAG 36049 ||| ||||||| || | | || || | | || ||||||||||| ||| Sbjct 4703 CACAAGAGCTAGAAGATAAGATAGCTGAATTTGTACGCATTTCACAAGAAAAAGGCAGAG 4644 Query 36050 ATGCAACTATCGATAAAACGATGAGATGGCTAAAAATATCTAACATTAATAAATTAAGTC 36109 ||||||| | || ||||| ||| | ||| || || || |||||||| |||||| Sbjct 4643 ATGCAACATTGGAAAAAACAATGCGTTGGTTAGGCATTGAAAATATTAATAAGTTAAGTG 4584 Query 36110 AAAAACAAATCGCAGAAGCACACCAAAAATTAGATGCAGGATTAAAACAATTGGATAGTG 36169 ||| | ||| |||| || |||| |||||||||||||||||||||| || | Sbjct 4583 GCAAAGGCTTGGCAACAGCAAACGCAAAACTAGATGCAGGATTAAAACAATTAGACA--- 4527 Query 36170 AGGAGAAACAATAATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGA 36223 ||||||| ||||||| ||| |||| | ||| ||||| | |||||||| Sbjct 4526 AGGAGAATGAATAATG---AATTTAACAATCTTAACGGGACGAATCACAAAAGA 4476 Score = 210 bits (232), Expect = 6e-50 Identities = 474/703 (67%), Gaps = 11/703 (2%) Strand=Plus/Minus Query 36591 GATGATGACTTACCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCAC 36650 ||||| || |||||||||| | || |||||| ||| | |||| | | || ||| Sbjct 4126 GATGACGATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCA 4069 Query 36651 TCAAGATGACGGTACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGTAATAAAGAAAC 36710 ||| |||| || |||| ||| | ||||| |||||| | | ||| ||||| Sbjct 4068 ACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTT 4009 Query 36711 ATTACTACTTGATAACGGGTTTGATGTGGAAGTCGATGTGAGC-GTCATAGATCCGTTTC 36769 ||||||||||||||||| || || || ||| | |||| ||| ||| | || || | Sbjct 4008 TTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGT-AGCAGTCGTTGACCCATACA 3950 Query 36770 GAATTACCGGCAAGCAACGACGAAAAATATTCGCGCTTGTCAAAGACATAGAAGAATATA 36829 ||| || | |||||||| ||||| ||||||| ||||| || || ||||||| ||| Sbjct 3949 AAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATA 3890 Query 36830 CAGGTCAACCAATGGACTATATGCGACATATGTTCATCGAGTATGTAAG-GACTTACTAC 36888 |||| ||| || |||||| | || | ||| || |||||| | | || ||| Sbjct 3889 CAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTA-TAC 3831 Query 36889 GGCTATGATGAACGTATTTCACTAAGTAATTGTACGAGAACACAAGCAAGTCAAATCATT 36948 ||||| ||||| || || ||||| | ||||| | || | | ||||||||||| || Sbjct 3830 GGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATA 3771 Query 36949 GAAGCAACGCTTGACTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGTAAT 37008 || | | | |||| |||| ||| | || |||| || || || || ||||| ||| || Sbjct 3770 GATGTAGCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGAT 3711 Query 37009 CTACTGAAACGAGATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATA 37068 ||| | || || | | | || |||||| | | ||| | || | || || || || Sbjct 3710 CTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATC 3651 Query 37069 TGCGGAAAGCCTCACGCTGACTTAGCACATTACGAAGCAGTCGGCAGAGGCATGAACAGA 37128 || || ||| || || || |||||||||| ||||||| || | || |||||| Sbjct 3650 TGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGA 3594 Query 37129 AACAAAATGAACCACTATGACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAG 37188 ||| || | || | | |||| | ||||||| ||||| | ||||| || ||| Sbjct 3593 CGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAG 3534 Query 37189 CAACATGCGATTGGCGTTAAGTCGTTT-GATGATAAATACCACTTGCATGACTCGTGGAT 37247 ||||| | || ||| | | | |||| || | || || || || | | || ||| | Sbjct 3533 CAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGT 3475 Query 37248 AAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAGAAA 37290 | ||||| ||||| || || |||||| ||||||||| |||| Sbjct 3474 GGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141576889740010