Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq371 547 2e-151 >seq371 Length=40469 Score = 547 bits (606), Expect = 2e-151 Identities = 880/1257 (70%), Gaps = 14/1257 (1%) Strand=Plus/Minus Query 37113 CAATTTGAAATTGAAAGCACAATAATCGCTACGCTACTTAAACAACCGGACGTACTAGAA 37172 |||| |||||||||||| || | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 37173 AAGATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 37232 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 37233 GTAATGGACGTCGGAAAGATAGACCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 37292 | | || |||||| | || | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 37293 GAGTTTTTAGATGCAGATACTATAACTAAACTTTATAACTCCGATTTCATTGGATACGGA 37352 || ||| | ||| || |||||| | |||||||| |||| ||||| |||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 37353 TTCTTTGAACGTTACCAACAAGAATTATTGGAAAGCTATCAGCTCAACAAAGCAAACGAA 37412 |||||||| | || |||||||| ||||| ||| |||||| | | ||||| || ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 37413 -TTGGTAACTGAGTTCAAACAACAACCTACGAACC--AAAATTTTAACAACTTGATTGAT 37469 || | | | | || |||||| | |||| ||| ||| |||||| | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC--ACCTGAAACTTTTAATGAAATGGTTGAG 2013 Query 37470 GAACTCAAGGATTTAAAAACAATTACTAACAAAAAAGAAGACGGAAC-CAAGAAGTTTGT 37528 |||| || || |||| | || || | ||||||||| || || || ||| | | || Sbjct 2012 AAACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGC 1954 Query 37529 TGANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACCGGTTA 37588 | | ||| || ||| ||| | | | | || ||| || Sbjct 1953 TAAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATA 1894 Query 37589 TAAGCTCATGGATTACAAAATAGGGGGATTGGAGCCATCACAGTTAATCGTCATCGCAGC 37648 ||| |||||||| || ||||| || || || |||||| || || || || || || || Sbjct 1893 TAAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGC 1834 Query 37649 GCGTCCCTCAGTGGGTAAAACAGGCTTTGCATTAAACATGATGCTGAACATAGCACAAAA 37708 ||||| || ||||| || || ||||||||||| |||||| |||||| ||| || | Sbjct 1833 TCGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACA 1774 Query 37709 TGGATACAAAACATCTTTCTTTAGTCTCGAAACAACCGGCACATCGGTATTGAAACGTAT 37768 || || ||||||| ||||||||| | |||||||| || | | | || || | | Sbjct 1773 AGGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATT 1714 Query 37769 GTTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGC 37827 | |||| || || |||||||| ||||||| || ||| | | || || || | ||| Sbjct 1713 GCTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGC 1655 Query 37828 CGGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATA 37887 | |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | | Sbjct 1654 CAAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACA 1595 Query 37888 TTTCTGATAAAAGTAATATCACACCGCAAGATGTGCGAGCGCAAGCAATGAGGCATTCAG 37947 || ||| | || | | ||||| ||||| | |||| ||||| |||| |||| | Sbjct 1594 TTAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTG 1535 Query 37948 ACAGGCAACAAGTTATTTTTATAGATTATCTTCAACTGATGGATACTGATGCGAAAGTTG 38007 ||| | ||||||||| ||||| ||||| |||||| | ||||| || ||| | || |||| Sbjct 1534 ACAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTG 1475 Query 38008 ATAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAACGAGACAG 38067 ||||||| || ||||| |||||||||||||| ||||| || || || || || || |||| Sbjct 1474 ATAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAG 1415 Query 38068 GCGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGACAGGATAAAA 38127 | ||||| || ||| | ||||| ||| |||||||||| || || || ||| | |||||| Sbjct 1414 GAGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAAC 1355 Query 38128 GACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCGA 38187 | || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | |||| Sbjct 1354 GTCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGA 1295 Query 38188 TGCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACTGGCAAAT 38247 || | | || | |||||||| || | | || |||| || | || |||| |||| Sbjct 1294 TGATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAAT 1238 Query 38248 CTATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTTG 38307 |||| ||||||||||| |||||||| |||||||| || ||||| || | |||||||||| Sbjct 1237 CTATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTG 1178 Query 38308 AGTATTACAAGAAGACTCAGAGGTTTTTCACATGAATATAATGCAA-TTCAAAAGCT 38363 | | ||||||||| || |||||||||||||||||| | || ||| ||||| |||| Sbjct 1177 AATTTTACAAGAAAACACAGAGGTTTTTCACATGAGTGTAGCACAATTTCAACAGCT 1121 Score = 232 bits (256), Expect = 2e-56 Identities = 473/696 (68%), Gaps = 9/696 (1%) Strand=Plus/Minus Query 35298 GACTTACCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCACTCAAGA 35357 || |||||||||| | || |||||| ||| | |||| | | || ||| ||| | Sbjct 4120 GATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAA 4063 Query 35358 TGACGGTACAACAACAGTTGTCATCTCGGGCGTCGAATTAGGTAATAAAGAAACATTACT 35417 ||| || |||| ||| | ||||| ||| || | | ||| ||||| ||||| Sbjct 4062 TGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACT 4003 Query 35418 ACTTGATAACGGATTTGATGTGGAAGTCGATGTAAGCGTCATAGATCCGTTTCAAATTAC 35477 ||||||||||||||| || || ||| | ||||| ||| | || || | |||| || Sbjct 4002 ACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAAAATAAC 3943 Query 35478 CGGCAAGCAACGACGAAAAATATTTGCGCTTGTCAAAGATATAGAAGAACATACAGGTCA 35537 | |||||||| ||||| |||| || ||||| || |||||||||| |||||||| Sbjct 3942 TGATAAGCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATACAGGCAC 3883 Query 35538 ACCAATGGACTATATGCGACATATGTTCATCGAGTATGTAAG-GACTTACTACGGCTATG 35596 ||| || |||||| | || | ||| || |||||| | | || |||||||| | Sbjct 3882 GCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTA-TACGGCTACG 3824 Query 35597 ATGAACGTATTTCACTAAGTAATTGTACGAGAACACAAGCGAGTCAAATCATTGAAGCAA 35656 |||| || || ||||| | ||||| | || | | || |||||||| || || | | Sbjct 3823 ATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAG 3764 Query 35657 CACTTGACTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGTAATCTACTGA 35716 || |||| |||| ||| | || |||| || || || || ||||| ||| ||||| | | Sbjct 3763 CAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCA 3704 Query 35717 AACAAGATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATATGCGGAA 35776 | | || | | | || |||||| | | ||| | || | || || || || || || | Sbjct 3703 AGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCA 3644 Query 35777 AGCCTCACGCTGACCTAGCACATTACGAAGCAGTCGGTAGAGGCATGAACAGAAATAAGA 35836 || || || || ||||||||||| ||||||| ||| | || |||||| |||| Sbjct 3643 AG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGA 3587 Query 35837 TGAATCACTATGACAAACACGTATTAGCGTTATGTCGGGAACATCATAACCAGCAACATG 35896 | | || | | |||| | ||||||| ||||| |||||||| ||||||| | Sbjct 3586 TAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACG 3527 Query 35897 CGATTGGCGTTAAGTCGTTT-GATGATAAATATCAATTGCATGACTCGTGGCTAAAAGTT 35955 || ||| | | | |||| || | || ||||| || | | || ||| | | ||| Sbjct 3526 ACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTT 3468 Query 35956 GATGAGAGGCTCAACAAAATGTTGAAAGGAGAGAAA 35991 || ||||| || ||||||||| ||||||||| |||| Sbjct 3467 GACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 159 bits (176), Expect = 1e-34 Identities = 310/457 (68%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 38752 ATTGCAAGCAACGA---TATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAAT 38804 |||| ||| ||||| |||||||| | ||| ||| |||| || | ||||||||||||| Sbjct 793 ATTG-AAGAAACGAATATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAAT 735 Query 38805 GCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTAC 38864 || |||||||||||||| ||||| || || ||||||||||| || || || || ||| Sbjct 734 GCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTAC 675 Query 38865 CAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAA 38918 | || |||||| | |||| || |||| | ||||| ||||| |||||| Sbjct 674 AAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT------ATCGAGATACAA 621 Query 38919 CCGAAATTTNNNNNNNNNNNNNNNNNNGGGAAACAAAGACCGATTACGTATATAGCCGAT 38978 |||| || | || |||||| | | | ||||| || || Sbjct 620 CCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGAC 561 Query 38979 TTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACT 39038 || | | ||||| | | || || ||||||| |||||||||||||| | |||||| Sbjct 560 TTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACA 501 Query 39039 GAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACG 39098 ||| || || | || |||||| |||| ||||||| ||| |||| || | || Sbjct 500 GAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACT 441 Query 39099 TGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTG 39158 |||||||||||||| ||||| ||||||||| |||| ||| | ||||| || || Sbjct 440 TGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAAC 381 Query 39159 AAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGAT 39195 || || ||||| || | || | || | || ||||| Sbjct 380 AAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146626236152254