Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007056.1 Length=45286 Score E Sequences producing significant alignments: (Bits) Value seq371 385 1e-102 >seq371 Length=40469 Score = 385 bits (426), Expect = 1e-102 Identities = 768/1119 (69%), Gaps = 53/1119 (5%) Strand=Plus/Minus Query 36480 AAGGAGAATAAATAATGGCGAATTCAGTAATCTTAACAGGACGTATTACTAAAGACTTAG 36539 ||||||||| ||||||| |||| | ||||||||| ||||| || || |||||||||| Sbjct 4527 AAGGAGAATGAATAATG---AATTTAACAATCTTAACGGGACGAATCACAAAAGACTTAG 4471 Query 36540 AACTTAAACCAGCAGGACAAACACAAGTTACAAACTTTTCTATAGCAGTAGACAACCCAT 36599 |||| ||| ||||| |||||||||| ||||||||||| |||| ||||| ||||||| Sbjct 4470 AACTAAAAGATGCAGGTAAAACACAAGTAACAAACTTTTCATTAGCGGTAGATAACCCAT 4411 Query 36600 TTAAAAAGGACGATGCATCATTTTTTGACATCGTGGCTTTTGGCAAGACAGCAGAGTTGC 36659 ||||||| || || | |||||| || || || || |||||||| || |||||||| | Sbjct 4410 TTAAAAAAGATGACGTATCATTCTTCGATATTGTAGCTTTTGGTAAAACAGCAGAACTAT 4351 Query 36660 TCAACAACTACTGCGGTAAAGGTAGCAAGATTCTAATCGAGGGGAATCTCAAACAAGACC 36719 | || ||||| ||||||||||||||||| ||| || ||||| ||| | |||||||| | Sbjct 4350 TAAATAACTATTGCGGTAAAGGTAGCAAAATTGGCATTGAGGGCAATTTAAAACAAGATC 4291 Query 36720 GATTTCAAGATAAACAAGGCAACAACCGCTCTGCAGTGCGTGTAATCGCAAATCGTGTTG 36779 | || | |||||| |||| ||||| || || | || | |||||||| |||||||||| Sbjct 4290 GTTTCGAGGATAAAGAAGGTAACAAACGTTCAGTTGTTAGAGTAATCGCGAATCGTGTTG 4231 Query 36780 AATTCCTAGACAGTAAAGGGCAATC---AAATAACCAACCCAAACAACAACAAGGGCAGG 36836 |||| |||| | |||| ||||| | | ||| | ||||| | |||| ||| | Sbjct 4230 AATTTTTAGATACAAAAGAACAATCTCAACAGAACGGA--CAAACTA-AACA---GCAAG 4177 Query 36837 CGCAAGACAATCCTTT------TGATAACAGTGATGACCAGTT----TTCA-------GA 36879 || || |||||||| || |||| ||| ||||| || |||| || Sbjct 4176 CGTCTGAGAATCCTTTTAATAATGCTAACGGTG--GACCAATTGATATTCAAGATGACGA 4119 Query 36880 TTTACCTTTTTAGGACGTGATTAAATGCCTTTAATCAAAAGTTACATCACTCAAAACAAT 36939 |||||| || || | ||||||| ||| | |||| |||| |||||| ||||| || Sbjct 4118 TTTACCGTTCTAAGGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAATGAT 4059 Query 36940 GGCATTACAACAGCGATTGTTGAGGGTGTAGAGCTTAATGACAAAGATTCGTTGTTATTA 36999 |||| | ||| || | ||||||||||| |||| | ||||||| | || || | Sbjct 4058 GGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACTACTT 3999 Query 37000 GATAACGGATTAGAAGTTGAAGTAGATGT--TATTCCAGTTGATCCGTACACAATCACGG 37057 ||||||||||||||||||||| |||| | || ||||| || |||| ||| || | Sbjct 3998 GATAACGGATTAGAAGTTGAATGCAATGTAGCAGTC--GTTGACCCATACAAAATAACTG 3941 Query 37058 ATAAGCAGAGAAGAAAAATCTTCGCT-TTGTGTAACGACATCGAGCAACACACGGGGCAA 37116 ||||||| | |||||| | |||||| ||||| ||||| || || || || || Sbjct 3940 ATAAGCAACGTAGAAAAGTATTCGCTCTTGTG-AACGATATAGAAGCTCATACAGGCACG 3882 Query 37117 CCGCGTGAATACATGCGCTCAATG--TTTATGGATTACGTGGCGTTTG-TTGAGGGGT-- 37171 || | || || ||| | |||| || || || || ||| || | | || | Sbjct 3881 CCACAAGATTATATGAG--GAATGTATTCCAAGAATATGT-ACGTGTGCTATACGGCTAC 3825 Query 37172 -ATGACAGCTTATCCCTCTCAAATTGTACACGTACACAAGCAAATCAAGTCATCGAAGTG 37230 |||| || |||| || | ||||| | | | | |||| |||| | || || || Sbjct 3824 GATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTA 3765 Query 37231 ATACTGGATTGGGTGTTTCATAACGATATACCACTTAATTACAAAACAAGCGATTTACTA 37290 | | || ||| | || | ||| | || || || | || |||||||| ||| || | Sbjct 3764 GCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATC 3705 Query 37291 AAGCAAGATAAATCATTCTTGTATTGGTCAACAGTAAACCGTAACTGTGTAATATGCGGT 37350 ||| | || | | | || || || | | || | || | || || || || || || Sbjct 3704 AAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGC 3645 Query 37351 AAGCAACACAGTGATTTAGCACATAGGTATGCGGTAGGACGTGGGCGTGACAGAACAAAG 37410 |||| | || || |||||||| | || ||||| ||||| || ||||| ||| Sbjct 3644 AAGC-ATGCA--GAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAG 3588 Query 37411 ATAAACCACTACGGCAATCAAGCATT--GGCATTGTGCCGTGAACATCACACAGAACAGC 37468 ||| | || | ||| ||| ||| | | ||| || | ||||| | ||| || | Sbjct 3587 ATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTT--TCATCATAAAGAGCAAC 3530 Query 37469 ACAACATTGGAATGGACAGTTTTAACGATAAATACCATCTACACGACAGTTGGGTCGATG 37528 || |||| || ||||| ||||| || | || || ||| || | | ||||| || | Sbjct 3529 ACGACATGGGCATGGATAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACG 3470 Query 37529 TAGACGACAGGTTGAATAAAATGCTGAAAGGAGAGAAAG 37567 | ||||| || | || |||||||||||||||| ||||| Sbjct 3469 TTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAAG 3431 Score = 232 bits (256), Expect = 2e-56 Identities = 294/399 (74%), Gaps = 9/399 (2%) Strand=Plus/Minus Query 39663 GATAAACCTCAAGTTATATTTATCGACTACTTGCAACTTATGCAGTCAGATACGCCAACA 39722 || ||||| |||||||||||||| || ||| | ||| | ||| | ||||||| | Sbjct 1535 GACAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACT---AAT 1479 Query 39723 AATGACAGACGAGTTGATGTAGAGAAGATAAGTCGTGACCTTAAAATCATCGCAAATGAA 39782 ||| ||||| |||| || || |||||| || ||| | |||||||| ||||||||| Sbjct 1478 GTTGATAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAA 1419 Query 39783 ACAGGGAGCG-TCATAGTACTGCTTTCTCAACTGAATAGAGGTGTAGAGTCTAGAAATGA 39841 ||||| ||| | |||||| | ||||||||| ||||| | || || || || ||||| || Sbjct 1418 ACAGG-AGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGA 1360 Query 39842 TAAACGCCCTATGATGAGTGATTTGAAAGAATCTGGAGGCATTGAAGCAGACGCTAGTAT 39901 |||||| || ||| | || ||||||| || || || |||||||||||||| ||||| Sbjct 1359 TAAACGTCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTAT 1300 Query 39902 GATATTCATGTTGTACCGTGATGATTACTATAATCGTGATGATCATCAAGAGAA--TGAT 39959 | | |||||||| | ||||||||||| | | ||||| | || ||| || | Sbjct 1299 GGCGATGATGTTGTATAGAGATGATTACTACGAACAAGATGA--AGCAGATGAATCTGGT 1242 Query 39960 AAATCAGATTTAGAAGTGAATATTGCTAAAAACAAAGATGGGGAAACTGGTGTTGTTAAC 40019 ||||| | ||| ||||| || || ||||||||||| |||||||||||| || | Sbjct 1241 AAATCTATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAA 1182 Query 40020 TTTGAATATTACAAATCTACACAAAGGTTCTTCACATGA 40058 ||||||| |||||| ||||| ||||| ||||||||| Sbjct 1181 TTTGAATTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 127 bits (140), Expect = 6e-25 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 37770 GATGAGTGATCAACCGAATTACTATTCAATTATTCCTGCAAGCGTAAGGTACGACAAAGA 37829 ||||| || ||||| || || ||||| || ||||| || || || || ||| ||| Sbjct 3428 GATGACGGAACAACCTAACTATTATTCGATAATTCCAGCTCATGTTAGATATGACGTAGA 3369 Query 37830 TTTAAAACCTATGGAAATCATAATGTATGGTGAAATAACCGCACTGGCAAACAAATACGG 37889 |||||||| |||||||| || ||||| |||||| | || || | |||| ||||| || Sbjct 3368 CTTAAAACCAATGGAAATTATTATGTACGGTGAACTTACTGCTTTATCAAATAAATATGG 3309 Query 37890 CTATGCCTACGCTAGCAATAGTTACTTTGCAGAGCTGTATCAAGTCCACaaaaaaaCAGT 37949 ||| | |||||| | |||||||||||||| | | ||| | ||||| ||||||||||| Sbjct 3308 ATATTCATACGCTGGAAATAGTTACTTTGCTAACTTATATAACGTCCATAAAAAAACAGT 3249 Query 37950 TTCGA 37954 |||| Sbjct 3248 GTCGA 3244 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/87 (84%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 19145 AGTTTTTGGGCATGTTTTTGGTTCGGTAAATGTAAATAAGT---TGTAAAAGAGTCGGCG 19201 |||||||||| ||||||||||||||| |||||||||||| | | | |||| ||||||| Sbjct 18000 AGTTTTTGGGAATGTTTTTGGTTCGGAAAATGTAAATAATTAAATTTTAAAG-GTCGGCG 17942 Query 19202 CTTTTGCGTCGGCTTTTTATTATGCAG 19228 | | |||||||||||||||| || || Sbjct 17941 C-ATAGCGTCGGCTTTTTATTTTGGAG 17916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144786328555904