Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007057.1 Length=43576 Score E Sequences producing significant alignments: (Bits) Value seq371 522 7e-144 >seq371 Length=40469 Score = 522 bits (578), Expect = 7e-144 Identities = 871/1257 (69%), Gaps = 14/1257 (1%) Strand=Plus/Minus Query 35749 CAATTTGAAATTGAAAGCACAATAATCGCTACGCTACTTAAACAACCGGACGTACTAGAA 35808 |||| |||||||||||| || | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 35809 AAGATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 35868 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 35869 GTAATGGACGTCGGAAAGATAGATCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 35928 | | || |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 35929 GAGTTTTTAGATGCAGATACTATAACTAAACTTTACAACTCCGATTTCATTGGATACGGA 35988 || ||| | ||| || |||||| | || ||||| |||| ||||| |||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 35989 TTCTTTGAACGTTATCAACAAGANNNNNNNNNNNNNNNNNNAATCAACAAAGCGAAAGAA 36048 |||||||| | ||||||||||| ||| | |||||||| ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 36049 -TTGGTAACTGAGTTCAAACAACAACCTACGAACC--AAAATTTTAATAACTTGATTGAT 36105 || | | | | || |||||| | |||| ||| ||| ||||||| | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC--ACCTGAAACTTTTAATGAAATGGTTGAG 2013 Query 36106 GAACTCAAGGATTTAAAAACAATTACTAACAGAAAAGAAGACGGAAC-CAAGAAGTTTGT 36164 |||| || || |||| | || || | || |||||| || || || ||| | | || Sbjct 2012 AAACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGC 1954 Query 36165 TGANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTA 36224 | | ||| || ||| ||| | | | | || || || Sbjct 1953 TAAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATA 1894 Query 36225 TAAGCTCATGGATTACAAAATAGGGGGATTGGAGCCGTCGCAATTAATCGTCATCGCAGC 36284 ||| |||||||| || ||||| || || || ||||| ||||| || || || || || Sbjct 1893 TAAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGC 1834 Query 36285 GCGTCCCTCAGTGGGTAAGACAGGTTTTGCATTAAACATGATGCTGAACATAGCACAAAA 36344 ||||| || |||||||| || ||||||||||| |||||| |||||| ||| || | Sbjct 1833 TCGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACA 1774 Query 36345 TGGATACAAAACATCTTTCTTTAGTCTCGAAACAACTGGCACATCAGTATTGAAACGTAT 36404 || || ||||||| ||||||||| | ||||||||||| | | | || || | | Sbjct 1773 AGGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATT 1714 Query 36405 GTTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGC 36463 | |||| || || |||||||| ||||||| || ||| | | || || || | ||| Sbjct 1713 GCTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGC 1655 Query 36464 CGGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATA 36523 | |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | | Sbjct 1654 CAAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACA 1595 Query 36524 TTTCTGATAAAAGTAATATCACACCGCAAGATGTGCGAGCGCAAGCAATGAGGCATTCAG 36583 || ||| | || | | ||||| ||||| | |||| ||||| |||| |||| | Sbjct 1594 TTAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTG 1535 Query 36584 ACAGGCAACAAGTTATTTTTATAGATTATCTTCAACTGATGGATACTGATGCGAAAGTTG 36643 ||| | ||||||||| ||||| ||||| |||||| | ||||| || ||| | || |||| Sbjct 1534 ACAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTG 1475 Query 36644 ATAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAACGAGACAG 36703 ||||||| || ||||| |||||||||||||| ||||| || || || || || || |||| Sbjct 1474 ATAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAG 1415 Query 36704 GCGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGACAGGATAAAA 36763 | ||||| || ||| | ||||| ||| |||||||||| || || || ||| | |||||| Sbjct 1414 GAGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAAC 1355 Query 36764 GACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCGA 36823 | || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | |||| Sbjct 1354 GTCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGA 1295 Query 36824 TGCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACTGGCAAAT 36883 || | | || | |||||||| || | | || |||| || | || |||| |||| Sbjct 1294 TGATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAAT 1238 Query 36884 CTATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTTG 36943 |||| ||||||||||| |||||||| |||||||| || ||||| || | |||||||||| Sbjct 1237 CTATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTG 1178 Query 36944 AGTATTACAAGAAGACTCAGAGGTTTTTCACATGAATATAATGCAA-TTCAAAAGCT 36999 | | ||||||||| || |||||||||||||||||| | || ||| ||||| |||| Sbjct 1177 AATTTTACAAGAAAACACAGAGGTTTTTCACATGAGTGTAGCACAATTTCAACAGCT 1121 Score = 159 bits (176), Expect = 1e-34 Identities = 310/457 (68%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 37388 ATTGCAAGCAACGA---TATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAAT 37440 |||| ||| ||||| |||||||| | ||| ||| |||| || | ||||||||||||| Sbjct 793 ATTG-AAGAAACGAATATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAAT 735 Query 37441 GCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTAC 37500 || |||||||||||||| ||||| || || ||||||||||| || || || || ||| Sbjct 734 GCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTAC 675 Query 37501 CAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAA 37554 | || |||||| | |||| || |||| | ||||| ||||| |||||| Sbjct 674 AAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT------ATCGAGATACAA 621 Query 37555 CCGAAATTTNNNNNNNNNNNNNNNNNNGGGAAACAAAGACCGATTACGTATATAGCCGAT 37614 |||| || | || |||||| | | | ||||| || || Sbjct 620 CCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGAC 561 Query 37615 TTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACT 37674 || | | ||||| | | || || ||||||| |||||||||||||| | |||||| Sbjct 560 TTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACA 501 Query 37675 GAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACG 37734 ||| || || | || |||||| |||| ||||||| ||| |||| || | || Sbjct 500 GAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACT 441 Query 37735 TGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTG 37794 |||||||||||||| ||||| ||||||||| |||| ||| | ||||| || || Sbjct 440 TGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAAC 381 Query 37795 AAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGAT 37831 || || ||||| || | || | || | || ||||| Sbjct 380 AAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139314603356324