Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007059.1 Length=43114 Score E Sequences producing significant alignments: (Bits) Value seq371 535 1e-147 >seq371 Length=40469 Score = 535 bits (592), Expect = 1e-147 Identities = 863/1234 (70%), Gaps = 11/1234 (1%) Strand=Plus/Minus Query 36891 CAATTTGAGATTGAAAGTACAATAATCGCTACGCTACTTAAACAACCGGACATACTAGAA 36950 |||| ||| ||||||||||| | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 36951 AAAATAAGGGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 37010 || |||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 37011 GTAATGGACTCCGGAAAGATAGACCATCAAGAAATTTATTTAAAAGCAACTAAAGATAAA 37070 | | || |||||| | || | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 37071 GAATTTTTAGATGCAGATACTATAACTAAACTTTACAACTCCGATTTCATTGGGTACGGC 37130 ||| ||| | ||| || |||||| | || ||||| |||| ||||| ||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 37131 TTCTTTGAACGTTATCAACAAGAATTATTGGAAAGTTATCAGCTCAACAAAGCTAACGAA 37190 |||||||| | ||||||||||| ||||| ||| ||||| | | ||||| || ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 37191 -TTGGTAACTGAGTTTAAACAACAACCTACGAACCAAAACTTT-AACAACTTGATTGATG 37248 || | | | | ||||||||| | |||| | | ||||||| || | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC-ACCTGAAACTTTTAATGAAATGGTTGAGA 2012 Query 37249 AACTCAAGGATTTAAAAACGATTACTAACAAAAAAGAAGATGGAAC-CAAGAAGTTTGTT 37307 |||| || || |||| | || || | ||||||||| ||||| || ||| | | || | Sbjct 2011 AACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGCT 1953 Query 37308 GNNNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTAT 37367 ||| || ||| ||| | | | | || || ||| Sbjct 1952 AAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATAT 1893 Query 37368 AAGCTCATGGATTACAAAATAGGGGGATTAGAGCCGTCGCAATTAATCGTCATCGCAGCG 37427 || |||||||| || ||||| || || || ||||| ||||| || || || || || Sbjct 1892 AAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGCT 1833 Query 37428 CGTCCCTCAGTGGGTAAAACAGGTTTTGCATTAAACATGATGTTGAACATAGCACAAAAT 37487 ||||| || ||||| || || ||||||||||| ||||||| |||||| ||| || | Sbjct 1832 CGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACAA 1773 Query 37488 GGATACAAAACATCTTTCTTTAGTCTCGAAACAACCGGCACATCGGTATTGAAACGTATG 37547 || || ||||||| ||||||||| | |||||||| || | | | || || | || Sbjct 1772 GGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATTG 1713 Query 37548 TTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGCC 37606 |||| || || |||||||| ||||||| || ||| | | || || || | |||| Sbjct 1712 CTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGCC 1654 Query 37607 GGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATTGATAT 37666 |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | || Sbjct 1653 AAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACAT 1594 Query 37667 TTCTGATAAAAGTAATATCACACCGCAAGATGTGCGAGCACAAGCAATGAGGAATTCAGA 37726 | ||| | || | | ||||| ||||| | |||||||||| |||| | || || Sbjct 1593 TAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTGA 1534 Query 37727 CGGGCAACAAGTTATTTTTATAGATTACCTTCAACTGATGGATACTGATGCGAAAGTTGA 37786 | | ||||||||| ||||| |||||||||||| | ||||| || ||| | || ||||| Sbjct 1533 CAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTGA 1474 Query 37787 TAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAATGAGACAGG 37846 |||||| || ||||| |||||||||||||| ||||| || || || || ||||| ||||| Sbjct 1473 TAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAGG 1414 Query 37847 CGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGACAGGATAAAAG 37906 ||||| || ||| | ||||| ||| |||||||||| || || || ||| | |||||| | Sbjct 1413 AGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAACG 1354 Query 37907 ACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCGAT 37966 || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | ||||| Sbjct 1353 TCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGAT 1294 Query 37967 GCTACTTTATCGCGATGATTATTATAACCGTGACGAAGATGACAGTATTACAGGCAAGTC 38026 | | | ||| | |||||||| || | | || |||| || | || | || || || Sbjct 1293 GATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAATC 1237 Query 38027 TATTGTTGAATGTAACATAGCTAAAAACAAAGACGGCGAAACTGGAGTAATTGAATTTGA 38086 ||| ||||||||||| ||||| || |||||||| || |||||||| || ||||||||||| Sbjct 1236 TATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTGA 1177 Query 38087 GTATTACAAGAAGACGCAGAGGTTTTTCACATGA 38120 | ||||||||| || |||||||||||||||||| Sbjct 1176 ATTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 161 bits (178), Expect = 3e-35 Identities = 305/450 (68%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 38542 ATATTTGATAT-TTAGAGG--TGGCACAGT-GAGTAAATACAACGCTAAGAAAGTTGAGT 38597 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 38598 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 38653 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 38654 -AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAACCGAAATTTNNNNNNN 38711 | |||| || |||| | ||||| ||||| |||||||||| || | Sbjct 658 GATTAATTATAGATGGTTATGACTAT------ATCGAGATACAACCGAGATATGAGCTAA 605 Query 38712 NNNNNNNNNNNGGGAAACAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAGG 38771 || |||||| | | | ||||| || || || | | ||||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 38772 AAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATCA 38831 | | || || ||||||| |||||||||||||| | |||||| ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 38832 AAGCGAAGATATTCAGATATCAGTATAAAGATGTGAATTTAACATGGATATGTAAAGCAC 38891 | |||||| |||| ||||||| ||| |||| || | || |||||||||||||||| Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 38892 CTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTGAAAGTCAGACGTAAAA 38951 |||| ||||||||| |||| ||| | ||||| || || || || ||||| || Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 38952 GAAAAAGAGAAATGAAGTGATTTAATGCAA 38981 | || | || | || |||||| ||| || Sbjct 364 GCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 93.3 bits (102), Expect = 1e-14 Identities = 175/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 35470 TTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCTGACCTA 35529 ||||| |||||| ||||| | || || || || || || |||| | || || ||| Sbjct 3686 TTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAGAGCTA 3630 Query 35530 GCACATTATGAAGCAGTCGGTAGCGGCATGAACAGAAACAAAATGAATCACTACGACAAA 35589 ||||||||| ||||||| ||| | || |||||| ||| || | || | |||| Sbjct 3629 GCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTAACAAC 3570 Query 35590 CATGTGTTAGCACTGTGTAGACAACATCATAATGAACAGCACGCAATTGGCGTTAAGTCG 35649 | || |||| ||| ||| |||||||| || || |||| || ||| | | | | Sbjct 3569 AAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGGA-TAG 3511 Query 35650 TTTGA-TGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTCAACAA 35708 ||| | | | || ||||| || | | || ||| | | ||||| ||||| || ||||| Sbjct 3510 TTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTAAACAA 3451 Query 35709 AATGCTGAAAGGAG 35722 |||||||||||||| Sbjct 3450 AATGCTGAAAGGAG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137836277600648