Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007061.1 Length=42802 Score E Sequences producing significant alignments: (Bits) Value seq371 518 9e-143 >seq371 Length=40469 Score = 518 bits (574), Expect = 9e-143 Identities = 856/1235 (69%), Gaps = 13/1235 (1%) Strand=Plus/Minus Query 37217 CAATTTGAAATTGAAAGCACAATAATCGCTACGCTACTTAAACAACCGGACGTACTAGAA 37276 |||| |||||||||||| || | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 37277 AAGATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 37336 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 37337 GTAATGGACGTCGGAAAGATAGATCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 37396 | | || |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 37397 GAGTTTTTAGATGCAGATACTATAACTAAACTTTACAACTCCGATTTCATTGGATACGGA 37456 || ||| | ||| || |||||| | || ||||| |||| ||||| |||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 37457 TTCTTTGAACGTTATCAACAAGANNNNNNNNNNNNNNNNNNAATCAACAAAGCGAAAGAA 37516 |||||||| | ||||||||||| ||| | |||||||| ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 37517 -TTGGTAACTGAGTTCAAACAACAACCTACGAACC--AAAATTTTAATAACTTGATTGAT 37573 || | | | | || |||||| | |||| ||| ||| ||||||| | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC--ACCTGAAACTTTTAATGAAATGGTTGAG 2013 Query 37574 GAACTCAAGGATTTAAAAACAATTACTAACAGAAAAGAAGACGGAAC-CAAGAAGTTTGT 37632 |||| || || |||| | || || | || |||||| || || || ||| | | || Sbjct 2012 AAACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGC 1954 Query 37633 TGANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTA 37692 | | ||| || ||| ||| | | | | || || || Sbjct 1953 TAAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATA 1894 Query 37693 TAAGCTCATGGATTACAAAATAGGGGGATTGGAGCCGTCGCAATTAATCGTCATCGCAGC 37752 ||| |||||||| || ||||| || || || ||||| ||||| || || || || || Sbjct 1893 TAAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGC 1834 Query 37753 GCGTCCCTCAGTGGGTAAGACAGGTTTTGCATTAAACATGATGCTGAACATAGCACAAAA 37812 ||||| || |||||||| || ||||||||||| |||||| |||||| ||| || | Sbjct 1833 TCGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACA 1774 Query 37813 TGGATACAAAACATCTTTCTTTAGTCTCGAAACAACTGGCACATCAGTATTGAAACGTAT 37872 || || ||||||| ||||||||| | ||||||||||| | | | || || | | Sbjct 1773 AGGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATT 1714 Query 37873 GTTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGC 37931 | |||| || || |||||||| ||||||| || ||| | | || || || | ||| Sbjct 1713 GCTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGC 1655 Query 37932 CGGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATA 37991 | |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | | Sbjct 1654 CAAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACA 1595 Query 37992 TTTCTGATAAAAGTAATATCACACCGCAAGATGTGCGAGCGCAAGCAATGAGGCATTCAG 38051 || ||| | || | | ||||| ||||| | |||| ||||| |||| |||| | Sbjct 1594 TTAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTG 1535 Query 38052 ACAGGCAACAAGTTATTTTTATAGATTATCTTCAACTGATGGATACTGATGCGAAAGTTG 38111 ||| | ||||||||| ||||| ||||| |||||| | ||||| || ||| | || |||| Sbjct 1534 ACAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTG 1475 Query 38112 ATAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAACGAGACAG 38171 ||||||| || ||||| |||||||||||||| ||||| || || || || || || |||| Sbjct 1474 ATAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAG 1415 Query 38172 GCGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGACAGGATAAAA 38231 | ||||| || ||| | ||||| ||| |||||||||| || || || ||| | |||||| Sbjct 1414 GAGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAAC 1355 Query 38232 GACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCGA 38291 | || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | |||| Sbjct 1354 GTCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGA 1295 Query 38292 TGCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACTGGCAAAT 38351 || | | || | |||||||| || | | || |||| || | || |||| |||| Sbjct 1294 TGATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAAT 1238 Query 38352 CTATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTTG 38411 |||| ||||||||||| |||||||| |||||||| || ||||| || | |||||||||| Sbjct 1237 CTATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTG 1178 Query 38412 AGTATTACAAGAAGACTCAGAGGTTTTTCACATGA 38446 | | ||||||||| || |||||||||||||||||| Sbjct 1177 AATTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 381 bits (422), Expect = 2e-101 Identities = 320/390 (82%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 29779 ACTTGCTACAACTCTACCTACAATTTTAACTTCATCGTCTTTACCATATACTTGTGGATA 29838 ||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||| Sbjct 8006 ACTTGCTACCACTCTACCTACTATTTTAACTTCATCATTCAATCCATATACTTGTGGATA 7947 Query 29839 GTGATTAGGATTGTTCGATTCAGGTATTAATATGATTTGGTCTCCATTGTATCTTATGCG 29898 |||||||||||||| ||||||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 7946 ATGATTAGGATTGTTGGATTCAGGTATTAATATAATTTGATCTCCGTTATATCTAATGCG 7887 Query 29899 CTTAACAGTACCGTTATACCCGTTTATCATGACTACACCTAACTGACCATTTTCGACGAT 29958 ||| ||||| | || || ||||| ||||| || |||||||| ||||||||||| || | Sbjct 7886 CTTTACAGTTGCATTGTAACCGTTAATCATAACAACACCTAATTGACCATTTTCAACAGT 7827 Query 29959 AGAATCTTTTTCCACTACAACCACATCACCTTCATCAAAAAGTTCGTTCATACTATCACC 30018 |||||||||||| | || || ||||| || || | ||| | || | |||||| || || Sbjct 7826 AGAATCTTTTTCAATCACTACAACATCGCCATCTTGAAATATTTTATCCATACTGTCGCC 7767 Query 30019 AGACACTTGTAAACCAAACTCTTCTTTATCAGGATTCAAATTTTT-AGTAGAGAAGTATA 30077 |||||||| | |||||| || ||||||| || || ||| ||| | ||||| ||||||| Sbjct 7766 AGACACTTTAAGACCAAATTCCTCTTTATTAGAAT-CAATTTTATCAGTAGCAAAGTATA 7708 Query 30078 TGTAATCAACTAAATTTTCTTCTGTGTATATAGGCATTCCTGCAGATATCTTTGATACAA 30137 ||||||||| ||| |||||||||| ||| ||||| | || |||||||| || || |||| Sbjct 7707 TGTAATCAATTAAGTTTTCTTCTGAGTAGATAGGTAAACCAGCAGATATTTTAGAAACAA 7648 Query 30138 CTGGTAtttttttAACTGGTAGTGTATCAA 30167 |||| |||||||||||||||||||| |||| Sbjct 7647 CTGGAATTTTTTTAACTGGTAGTGTTTCAA 7618 Score = 163 bits (180), Expect = 8e-36 Identities = 316/466 (68%), Gaps = 20/466 (4%) Strand=Plus/Minus Query 38856 ATTGCAAGCAACGA---TATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAAT 38908 |||| ||| ||||| |||||||| | ||| ||| |||| || | ||||||||||||| Sbjct 793 ATTG-AAGAAACGAATATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAAT 735 Query 38909 GCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTAC 38968 || |||||||||||||| ||||| || || ||||||||||| || || || || ||| Sbjct 734 GCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTAC 675 Query 38969 CAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAA 39022 | || |||||| | |||| || |||| | ||||| ||||| |||||| Sbjct 674 AAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT------ATCGAGATACAA 621 Query 39023 CCGAAATTTNNNNNNNNNNNNNNNNNNGGGAAACAAAGATCGATTACGTATATAGCCGAT 39082 |||| || | || |||||| | | | ||||| || || Sbjct 620 CCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGAC 561 Query 39083 TTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACT 39142 || | | ||||| | | || || ||||||| |||||||||||||| | |||||| Sbjct 560 TTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACA 501 Query 39143 GAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACG 39202 ||| || || | || |||||| |||| ||||||| ||| |||| || | || Sbjct 500 GAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACT 441 Query 39203 TGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTG 39262 |||||||||||||| ||||| ||||||||| |||| ||| | ||||| || || Sbjct 440 TGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAAC 381 Query 39263 AAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGATTTAATGCAA 39308 || || ||||| || | || | || | || |||||| ||| || Sbjct 380 AAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 93.3 bits (102), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 35782 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAG 35841 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 35842 ACCTGGCACATTATGAAGCAGTCGGCAGAGGCATGAACAGAAACAAAATGAATCACTACG 35901 | || ||||||||| ||||||| || | || |||||| ||| || | || | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 35902 ACAAACATGTGTTAGCACTGTGTAGACAACATCATAATGAACAGCACGCAATTGGCGTTA 35961 |||| | || |||| ||| ||| |||||||| || || |||| || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 35962 AGTCGTTTGA-TGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 36020 | | |||| | | | || ||||| || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 36021 AACAAAATGCTGAAAGGAG 36039 ||||||||||||||||||| Sbjct 3455 AACAAAATGCTGAAAGGAG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136837927739672