Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007062.1 Length=41690 Score E Sequences producing significant alignments: (Bits) Value seq371 138 3e-28 >seq371 Length=40469 Score = 138 bits (152), Expect = 3e-28 Identities = 239/353 (68%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 38445 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTTG 38504 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||||| Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 38505 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCGCTAACTATGATC 38558 | ||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 38559 GTATCGAACTACAACCGAAATNNNNNNNNNNNNNNNNNNNNGGGAAGCAAAGACCGATTA 38618 ||||| ||||||||| || || || ||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 38619 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTGTAGACGTTA 38678 ||||| || || || | | ||||| | | || || ||||||| ||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 38679 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 38738 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 38739 ATGTGAATTTAACGTGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGG 38791 |||| || | || |||||||||||||| ||||| ||||||||| |||| ||| Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGG 402 Score = 96.9 bits (106), Expect = 9e-16 Identities = 179/260 (69%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 35761 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATTTGCGGAAAGCCTCACGCTG 35820 |||| ||||| |||||| ||||| | || || || || || || |||| | || | Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 35821 ACCTAGCACATTACGAAGCAGTAGGTAGAGGCATGAACAGAAACAAGATGAATCACTACG 35880 | ||||||||||| ||||||||||| | || |||||| |||||| | || | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 35881 ACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATCAGATGGG--TGT 35938 |||| | ||||||| ||||| | ||||| || |||||||| | ||||| || Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 35939 TAAGTCATTTGATGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCT 35998 ||| || || | || ||||| || | | || ||| | | ||||| ||||| || Sbjct 3514 ATAGT--TTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACT 3457 Query 35999 CAATAAAATGTTGAAAGGAG 36018 || |||||| ||||||||| Sbjct 3456 AAACAAAATGCTGAAAGGAG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133279706440296