Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007063.1 Length=43231 Score E Sequences producing significant alignments: (Bits) Value seq371 381 2e-101 >seq371 Length=40469 Score = 381 bits (422), Expect = 2e-101 Identities = 569/800 (71%), Gaps = 12/800 (2%) Strand=Plus/Minus Query 32376 GATATTAGTTACTCCACAAATAAAAATAGAGCTAGGGAGTTTAACGGTATGGAAGAAGCG 32435 || ||||| ||||| || | | |||||| || |||||||||||| | || |||| | Sbjct 5266 GAAATTAGCTACTCAACGCAGTTTAGTAGAGCAAGAGAGTTTAACGGTTTAGATGAAGTG 5207 Query 32436 AGTATCAATATGGATTATCACAAAGCAATCAAGAAAACAGTGACAGAAACTATTGAGTAC 32495 | || ||||| ||||||| || || || | ||| | |||| | | || Sbjct 5206 ACAATTGATATGTCATATCACATGGCGATTAAACATACACATATAGAAGAAGATAAATAT 5147 Query 32496 GAGGAGGTAGAACATGACTGAACAAACATTATTTGAACAGTTGAACAGTAAAAACGTGAA 32555 |||||| |||| |||| |||| ||||||||||||||||||| |||| | ||||| Sbjct 5146 GAGGAGTTAGATTATGAGTGAAAAAACATTATTTGAACAGTTAAACACAATTAACGTATC 5087 Query 32556 TGATCATACAGAACaaaaaaaTGGAT-TAACTTATCTAGCATGGTCATATGCACACCAAG 32614 ||||||| ||| | || ||||| | ||||| || |||| ||| || ||||||| || Sbjct 5086 TGATCATGTTGAAAAGAAGAATGGCTATAACT-ATTTAGCTTGGACACATGCACATGAAC 5028 Query 32615 AGCTGAAAAAGATTGACCCAAACTACACAGTAAAAGTACACGAGTTTCCACATCCAGATA 32674 | || ||||| ||||||| ||||| | |||| |||| ||||||||||| || |||| Sbjct 5027 AACTTAAAAATGTTGACCCCAACTATGAAATAAAGATACATGAGTTTCCACACCCGGATA 4968 Query 32675 TTAACACAGAA--AATTATTTTGTACCTTATTTGGCTACACCAGAAGGCTATTTTGTACA 32732 | | || | | || ||||| ||||||||| | || || |||||||| ||||||||| | Sbjct 4967 T-AGCAAATGACCAAGTATTT-GTACCTTATCTAGCAACTCCAGAAGGTTATTTTGTAAA 4910 Query 32733 GGTATCTGTGACTGTGAAAGATAGTACAGAGACTGAGTGGCTTCCAGTATTGGACTTTAG 32792 ||||| | | | |||| || ||| || | || ||| | |||||||| ||||||| Sbjct 4909 AGTATCAATCATATTAAAAGGTATTACCGAATCAGAATGGTTACCAGTATTAGACTTTAA 4850 Query 32793 AAATAAATCGCTTGCTAAAGGTAGTGCAACAACTTTCGATATTAACAAAGCGCAAAAACG 32852 ||| || ||| | || ||||| ||||| || |||||||| || ||||| |||||||| Sbjct 4849 AAACAAGTCGTTAGCGAAAGGGCAAGCAACTACATTCGATATCAATAAAGCTCAAAAACG 4790 Query 32853 ATGTTTTGTTAAAGCTTCGGCTTTACACGGTTTAGGCTTATATATCTACAACGGCGAGGA 32912 || ||||||||||| | || |||||||| ||||| |||| ||||||||| | || || Sbjct 4789 TTGCTTTGTTAAAGCAGCAGCATTACACGGCTTAGGTCTATACATCTACAACCGTGAAGA 4730 Query 32913 ACTACCAAGTGCAAGTGACAACGATATTACAGAATTAGAAGAGCGTATCAATCAGTTCGT 32972 | |||| | ||| ||| | ||| ||| ||||||| || | | || || Sbjct 4729 ATTACCGAATGCTAGTAGTGAAGATGCACAAGAGCTAGAAGATAAGATAGCTGAATTTGT 4670 Query 32973 GAACTTATCTCAAGAAAAAGGGCGAGATGCAACTATCGATAAAACGATGAGATGGCTAAA 33032 | | || ||||||||||| |||||||||| | || ||||| ||| | ||| || Sbjct 4669 ACGCATTTCACAAGAAAAAGGCAGAGATGCAACATTGGAAAAAACAATGCGTTGGTTAGG 4610 Query 33033 AATATCTAACATTAATAAATTAAGTCAAAAACAAATCGCAGAAGCACACCAAAAATTAGA 33092 || || |||||||| |||||| ||| | ||| |||| || |||| |||| Sbjct 4609 CATTGAAAATATTAATAAGTTAAGTGGCAAAGGCTTGGCAACAGCAAACGCAAAACTAGA 4550 Query 33093 TGCAGGATTAAAACAATTGGATAGTGAGGAGAAACAATAATGTTAAATAGAACAGTATTA 33152 |||||||||||||||||| || | ||||||| ||||||| ||| |||| | ||| Sbjct 4549 TGCAGGATTAAAACAATTAGACA---AGGAGAATGAATAATG---AATTTAACAATCTTA 4496 Query 33153 GTAGGACGCTTAACAAAAGA 33172 ||||| | |||||||| Sbjct 4495 ACGGGACGAATCACAAAAGA 4476 Score = 208 bits (230), Expect = 2e-49 Identities = 439/645 (68%), Gaps = 15/645 (2%) Strand=Plus/Minus Query 34147 CAAGATGACGGTACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGTAATAAAGAAACA 34206 ||| |||| || |||| ||| | ||||| |||||| | | ||| ||||| Sbjct 4067 CAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTT 4008 Query 34207 TTACTACTTGATAACGGATTTGATGTAGAAGTCGATGTAAGCGTCATAGATCCATTTCGA 34266 |||||||||||||||||||| || || ||| | ||||| ||| | || |||| | Sbjct 4007 TTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAAA 3948 Query 34267 ATTACCGGCAAGCAACGCAAATTGATATTCGCA-TTGTGTAACGATATAGAAGCTCATAC 34325 || || | |||||||| | | ||||||| ||||| |||||||||||||||||||| Sbjct 3947 ATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTG-AACGATATAGAAGCTCATAC 3889 Query 34326 AGGACAACCTCGAGATTATATGAGGCAAATGTTCCAAGATTATGTGAAGTTT-CTGTATG 34384 ||| || | ||||||||||||| | | |||||||| ||||| | || | || || | Sbjct 3888 AGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGT-ACGTGTGCTATACG 3830 Query 34385 GCTATGAAGAACGCATATCTTTATCAAATTGTTCTCGAACTATAGCTAAGCAAATTATAG 34444 |||| || || |||||||| | | |||||||| | | | || | |||||||||| Sbjct 3829 GCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAG 3770 Query 34445 A---AGCGATGTTTGAGTGGATTTTTACAAATGCGATTCCATTAAATTATAAAACAAGCA 34501 | ||| | |||| ||||| || || || || | | ||||||||||| Sbjct 3769 ATGTAGCAA---TTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTG 3713 Query 34502 AATTAATGAAAGAAGATAAAAATTATCTTTATTGGGCAACTGTTACGCGTCATTGCATTA 34561 | |||| || | || | || | | | || ||| ||| | | | | | ||| ||| Sbjct 3712 ATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTA 3653 Query 34562 TATGCGGAAAGCCTCACGCTGACTTAGCACATTATGAAGCAGTCGGTAGAGGCATGAACA 34621 | || || ||| || || || ||||||||||| ||||||| ||| | || |||| Sbjct 3652 TCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACA 3596 Query 34622 GAAACAAGATGAATCACTATGACAAACATGTATTAGCGTTATGTCGCGATCATCACAACG 34681 || |||||| | || | | |||| | ||||||| ||||| | |||||| || | Sbjct 3595 GACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAG 3536 Query 34682 AGCAACATGCAATTGGTGTTAAGTCGTTT-GATGATAAATATCACTTGCATGACTCGTGG 34740 ||||||| | || || | | | |||| || | || ||||| || | | || ||| Sbjct 3535 AGCAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGG 3477 Query 34741 ATAAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAGAAA 34785 | | ||||| ||||| || || |||||| ||||||||| |||| Sbjct 3476 GTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 165 bits (182), Expect = 2e-36 Identities = 285/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 38203 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 38262 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 38263 AATGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 38316 ||||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 38317 GTATCGAAATACAACCGAAATTTNNNNNNNNNNNNNNNNNNNNGAAACAAAGACCGATTA 38376 ||||| |||||||||| || | |||||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 38377 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTA 38436 ||||| || || || | | ||||| | | || || ||||||| |||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 38437 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 38496 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 38497 ATGTGAATTTAACGTGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATAGCAT 38556 |||| || | || |||||||||||||| ||||| ||||||||| |||| ||| || | | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 38557 ATGAAGACTTAGTGAAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGATTTAATGCAA 38616 ||||||| || || || ||||| || | || | || | || |||||| ||| || Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138210658798514