Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007064.1 Length=42431 Score E Sequences producing significant alignments: (Bits) Value seq371 215 1e-51 >seq371 Length=40469 Score = 215 bits (238), Expect = 1e-51 Identities = 478/706 (68%), Gaps = 17/706 (2%) Strand=Plus/Minus Query 33283 GATGATGACCTCCCATTCTGATTGGAATGATTAAATGGCAAAAATTACTAGTTATATCAC 33342 ||||| || | || |||| | || |||||| ||||| ||| | | || ||| Sbjct 4126 GATGACGATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCA 4069 Query 33343 TCAAGACGATGGCACAACAACAGTTGTCATCTCGGGTGTCGAATTAGGTAATAAAGAAAC 33402 ||| | |||||||||| ||| | ||||| |||||| | | ||| ||||| Sbjct 4068 ACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTT 4009 Query 33403 ATTACTACTTGATAACGGATTTGATGTAGAAGTCGATGTAAGCGTCATAGATCCATTTCG 33462 |||||||||||||||||||| || || ||| | ||||| ||| | || |||| Sbjct 4008 TTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAA 3949 Query 33463 AATTACCGGCAAGCAACGCAAATTGATATTCGCA-TTGTGTAACGATATAGAAGCTCATA 33521 ||| || | |||||||| | | ||||||| ||||| ||||||||||||||||||| Sbjct 3948 AATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTG-AACGATATAGAAGCTCATA 3890 Query 33522 CAGGACAACCTCGAGATTATATGAGGCAAATGTTCCAAGATTATGTGAAGTTT-CTGTAT 33580 |||| || | ||||||||||||| | | |||||||| ||||| | || | || || Sbjct 3889 CAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGT-ACGTGTGCTATAC 3831 Query 33581 GGCTATGAAGAACGCATATCTTTATCAAATTGTTCTCGAACTATAGCTAAGCAAATTATA 33640 ||||| || || |||||||| | | |||||||| | | | || | ||||||||| Sbjct 3830 GGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATA 3771 Query 33641 GA---AGCGATGTTTGAGTGGATTTTTACAAATGCGATTCCATTAAATTATAAAACAAGC 33697 || ||| | |||| ||||| || || || || | | ||||||||||| Sbjct 3770 GATGTAGCAA---TTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGT 3714 Query 33698 AAATTAATGAAAGAAGATAAAAATTATCTTTATTGGGCAACTGTTACGCGTCATTGCATT 33757 | |||| || | || | || | | | || ||| ||| | | | | | ||| || Sbjct 3713 GATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTT 3654 Query 33758 ATATGCGGAAAGCCTCACGCTGACTTAGCACATTATGAAGCAGTCGGTAGAGGCATGAAC 33817 || || || ||| || || || ||||||||||| ||||||| ||| | || ||| Sbjct 3653 ATCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAAC 3597 Query 33818 AGAAACAAGATGAATCACTATGACAAACATGTATTAGCGTTATGTCGCGATCATCACAAC 33877 ||| |||||| | || | | |||| | ||||||| ||||| | |||||| || Sbjct 3596 AGACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAA 3537 Query 33878 GAGCAACATGCAATTGGTGTTAAGTCGTTT-GATGATAAATATCACTTGCATGACTCGTG 33936 |||||||| | || || | | | |||| || | || ||||| || | | || || Sbjct 3536 GAGCAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATG 3478 Query 33937 GATAAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAGAAA 33982 | | | ||||| ||||| || || |||||| ||||||||| |||| Sbjct 3477 GGTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 165 bits (182), Expect = 2e-36 Identities = 285/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 37400 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 37459 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 37460 AATGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 37513 ||||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 37514 GTATCGAAATACAACCGAAATTTNNNNNNNNNNNNNNNNNNNNGAAACAAAGACCGATTA 37573 ||||| |||||||||| || | |||||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 37574 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTA 37633 ||||| || || || | | ||||| | | || || ||||||| |||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 37634 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 37693 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 37694 ATGTGAATTTAACGTGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATAGCAT 37753 |||| || | || |||||||||||||| ||||| ||||||||| |||| ||| || | | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 37754 ATGAAGACTTAGTGAAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGATTTAATGCAA 37813 ||||||| || || || ||||| || | || | || | || |||||| ||| || Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135650787360114