Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq88 96.9 9e-15 >seq88 Length=9715273 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| | || |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 5552569 GCCCAGCAACTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACCCCGTACATG 5552628 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || ||||| | Sbjct 5552629 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 5552688 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 5552689 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 5552721 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || || |||||||||||||| | Sbjct 5551180 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATCTTTGAGTTTCTTGATTTA 5551239 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| ||||| | ||||| |||| ||| |||||| || Sbjct 5551240 AAGAAGAACACAGGAAAGGAAGAACAACGTGCCAGGGATCTTTTCTTTGCCCTTTGGATT 5551299 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || || ||| Sbjct 5551300 CCGGATCTCTTCATGAAACGAGTCGAG 5551326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303282979007078