Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 1e-14 seq40 93.3 4e-14 seq148 89.7 5e-13 seq1 89.7 5e-13 seq88 82.4 7e-11 >seq16 Length=31725842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || | || ||| | ||| | ||| ||||||||||||||||||||||| | Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || || ||||| || || |||| | | ||||| || ||||| Sbjct 21647085 AAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 21647144 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || || | | || | ||| || | || || | Sbjct 21647145 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 21647204 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||||||||| ||||||||||| Sbjct 21647205 TCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq40 Length=22651954 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||||| || | ||| ||||| || |||||||| || Sbjct 7366486 CCACCTCGCAGGCGAAGCACTAGGTGCAGGGTAGACTC----TGGATGTTGTAGTCAGAG 7366541 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||| ||||| || | || | |||||||||||| || ||| Sbjct 7366542 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 7366601 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| |||| | ||| | || || ||| ||| | Sbjct 7366602 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 7366661 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 7366662 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq148 Length=4887613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||| || | || | || ||||| || || || |||||||| Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||||||||| |||||| Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||| | | ||| | ||||| ||| || | Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050772 >seq1 Length=78885850 Score = 89.7 bits (98), Expect = 5e-13 Identities = 187/272 (69%), Gaps = 9/272 (3%) Strand=Plus/Plus Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA--TGTGCCGCAACTTTTCAAAGT 145586 |||||||||||||| ||||| || | || || || | | |||| || || | ||||| Sbjct 12367845 ATAATTTTATTCAAATTTCGGACAATGACTTTAGTGACTTCTGCC--AATTTCTTAAAGT 12367902 Query 145587 CAAACCGAGCCTCGTCA-ACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 || | | | | | | | ||| | ||| | || | ||| | || ||||| |||||| Sbjct 12367903 CATAT-GTGTGTTCTGATATGAC-ATACA--TTTTCAGGGCCAGGGAAGCCAAGTTACAA 12367958 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 ||||| ||| || | | | || | ||| || || | ||||| |||||| |||||| Sbjct 12367959 ACTGCAACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTG 12368018 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 || |||||||| || || || || || ||| || | | || |||||||||||||| Sbjct 12368019 ATTGTTCCCAGGTTCTGTTGGTTGCTCTTCTGATTATAGGAATCTTTGTAGAGCATGTAT 12368078 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 || ||| ||||| ||| ||||| | ||| Sbjct 12368079 GGGGTGCCTGTCTCTGTCTGAGTCTCAATGAT 12368110 >seq88 Length=9715273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||| || || | ||||| ||||| |||||||| |||||||| || ||||| || || || Sbjct 5552712 TACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTT 5552653 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCAC 145794 || || || | || ||||||||||||||||| ||| ||||| ||| | ||| | Sbjct 5552652 CCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTCTGTCTGAGACTCAAT 5552593 Query 145795 GAT 145797 ||| Sbjct 5552592 GAT 5552590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471987848223360