Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq148 91.5 1e-13 seq40 89.7 4e-13 seq117 84.2 2e-11 >seq148 Length=4887613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 4050789 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4050848 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || Sbjct 4050849 TCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 4050908 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | || || | ||| ||| ||| | |||||||| Sbjct 4050909 TGGATCTTGGC--CTTCACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGG 4050966 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || || || ||||| ||||||||| Sbjct 4050967 TCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 4051004 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || || |||||||| | | || | | || |||| || Sbjct 4050342 TGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 4050401 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || |||| ||| ||||| ||| | ||| ||||| || || || Sbjct 4050402 TTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 4050461 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | || || | |||||| |||| ||||||||| || || | Sbjct 4050462 GC--CTTCACATTCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAG 4050519 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| |||||||| Sbjct 4050520 TCAGGGTCTTCACAAAGATCTGCAT 4050544 >seq40 Length=22651954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | || || | ||||| || ||||| || ||||||||||| | Sbjct 7366485 CCCACCTCGCAGGCGAAGCACTAGGTGCAGGGTAGACTC----TGGATGTTGTAGTCAGA 7366540 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||||| |||||||| ||| | || || ||||| ||||| || Sbjct 7366541 GAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGG 7366600 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || ||| || || | | | ||||| | ||||||| Sbjct 7366601 GATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGGGCTCC 7366658 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 7366659 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq117 Length=6347111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | | || | | | || |||| || Sbjct 1554184 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGC 1554125 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| | | | || |||| ||| ||||| ||| | ||| ||||| || || || Sbjct 1554124 TTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 1554065 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | || || | ||| ||| ||||| |||||||| || || | Sbjct 1554064 GC--CTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAG 1554007 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || | || || ||||||||| Sbjct 1554006 TCAGGGTCTTCATGAAGATTTGCATTTTG 1553978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405067121384710