Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq16 105 4e-18 seq148 104 2e-17 seq115 104 2e-17 seq39 93.3 3e-14 seq126 89.7 3e-13 seq35 87.8 1e-12 >seq16 Length=31725842 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || | |||||| | |||||| ||| |||||||||||| ||||||||||| Sbjct 21647024 ACCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGA 21647083 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| || | | || || | ||| || || ||||| || || | ||| ||||| | || Sbjct 21647084 CAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || ||| || || || ||||| | | ||| ||| |||||| Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | ||||| || || |||||||| || Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq148 Length=4887613 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| |||| || |||||| ||| || || |||||||||||||| Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || |||| ||| Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || ||| ||||||| | ||||| | ||| ||| Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| ||||| || |||||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050772 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| || | |||| || ||||| ||| || || || ||||| | Sbjct 4050770 CATT-CCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGT 4050828 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | || | || || | ||||| || ||||| || || | || || || | Sbjct 4050829 CAGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAG 4050888 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||| ||| || || ||||||||||| | ||||| | || Sbjct 4050889 GAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTT 4050948 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||||| || || || || || |||| ||| |||||||| || ||||| || Sbjct 4050949 CCACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 4051003 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | || | || |||||| |||||| || |||||||| ||||| Sbjct 4050318 CCACCCCTCAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAA 4050377 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | ||| Sbjct 4050378 AGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050437 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || ||||||||||| | ||||| | | || || Sbjct 4050438 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACC 4050497 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| ||||| || |||||||| Sbjct 4050498 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 >seq115 Length=6739808 Score = 104 bits (114), Expect = 2e-17 Identities = 200/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGT 6257 |||| | | |||||| ||||| | ||||| |||||||| ||||| || ||||| | Sbjct 39639 GTTCGATCACTACAAGATGCCCC--ATCTGATTGCCAAGGTTGAGGGCAAAGGAAATAGA 39582 Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317 || || || || |||||||||||| ||| | || ||||| || || ||| | || Sbjct 39581 ATCAAGACAGTTATTGTCAACATGGTTGACATTGCAAAGGCACTTAATCGGCCTCCAACG 39522 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 || || || |||| || || || || || || || ||||| ||||||||| || || Sbjct 39521 TATCCCACTGAATACTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTTGATGTAAAGAAT 39462 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || || | ||| || || ||||| ||| | ||| |||| || | | || || Sbjct 39461 GACCGTTACATTGTCAATGGATCTCATGAGGTGAATAAGTTGCAAGAGATGTTGGATGGA 39402 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || ||| || ||||| || |||| || || || ||||| || || || || Sbjct 39401 TTCATTAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAACCCTGAAACAGATCT 39349 >seq39 Length=21454635 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| ||||||||||||||| |||| | || Sbjct 17272291 CAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 17272232 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| || | ||||| || || Sbjct 17272231 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTATC 17272172 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || || ||||| | || || |||||| || | || || || Sbjct 17272171 CTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGGT 17272112 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | |||||||| ||||| |||||||| || Sbjct 17272111 CTTCTCCATAAAGGTTTTTACGAAAATCTGCATCTT 17272076 >seq126 Length=6421402 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| || |||||||||||| |||||||| |||||| |||| | | || | ||| Sbjct 2409835 ATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTG 2409894 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || ||||| || || | ||| ||||| | || | ||||| || ||| || || Sbjct 2409895 CTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2409954 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 || ||||| | | ||| ||| |||| | || | ||| || || || || || Sbjct 2409955 GGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGT 2410014 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 | |||||| ||||| |||||||| || Sbjct 2410015 AAGGGTTTTTACGAAAATCTGCATCTT 2410041 >seq35 Length=22943593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169 ||| |||||| | | |||||||||||| ||||||||||||||| || || | || || | Sbjct 21587383 CCAGATGAAGGGGGGACTCCTTTTGAATGTTGTAATCAGACAAAGCATGTCCATCTTCCA 21587324 Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 ||| || || |||||||| || ||| ||||| | || | ||||| || ||| | Sbjct 21587323 CTTGCTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 21587264 Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289 | || || ||||| | | ||||||| |||||| || | || || || || | Sbjct 21587263 TCTTGGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTCTT-C 21587205 Query 38290 CCGTCAAG-GTTTTCACGAATATCTGCATGTT 38320 | |||| ||||| || || ||||| || || Sbjct 21587204 CTTGCAAGAGTTTTTACAAAAATCTGTATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334929936507299