Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq148 105 6e-18 seq40 91.5 1e-13 seq41 82.4 7e-11 >seq148 Length=4887613 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| |||| || || ||||||| | |||||||| | Sbjct 4050773 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAACCCAG 4050714 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || ||| | ||| || ||| || |||||||| || || || ||||| Sbjct 4050713 TGATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCA 4050654 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||| | |||||||| Sbjct 4050653 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACTCTTTCTGATTACAA 4050594 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || || | || || | || ||||| || Sbjct 4050593 TATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCCTGAGAGGTGG 4050546 >seq40 Length=22651954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| |||||| | | Sbjct 7366708 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 7366649 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| || ||||| || || || || |||||| Sbjct 7366648 GACACCATCGAG--AATGTCAAAGCCAAAATCCAA-GACAAGGAGGGCATCCCCCCTGAC 7366592 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || |||||||||||||| | || |||| || ||| | || ||| Sbjct 7366591 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCTGACTAC 7366532 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || | ||| || || || || ||||||| Sbjct 7366531 AACATCC----AGAGTCTACCCTGCACCTAGTGCT 7366501 >seq41 Length=20498451 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| ||||| || ||| ||||| || || || || |||||||| Sbjct 848353 TGACACCATTGAGAACATGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCTGACCA 848294 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||||||||| || | ||||||| |||| || || ||||| Sbjct 848293 ACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGATGCACCCTGTCTGACTACAA 848234 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || || | ||||| | || || ||||| Sbjct 848233 TATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCTGCCTGAGGGGAGG 848186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433305665868635