Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq26 250 3e-61 seq48 123 3e-23 seq127 102 9e-17 seq192 100 3e-16 seq135 95.1 1e-14 seq136 87.8 2e-12 seq117 86.0 7e-12 >seq26 Length=26652979 Score = 250 bits (276), Expect = 3e-61 Identities = 528/773 (68%), Gaps = 15/773 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || ||||| || ||||| |||||||| ||| |||| || ||||| || | || | Sbjct 3407902 CTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATCCCGATGAG-CTC 3407960 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 ||||| | || ||||| | ||| || | |||||| | ||| | | | ||| || Sbjct 3407961 ACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATTGATAATGATCTCC 3408020 Query 93044 ATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 | ||||| ||| | || ||||| || || | | ||| |||| | ||| |||||||| Sbjct 3408021 TTCACTCT-CTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAGGCAGGCAAAGTC 3408079 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCA-TTGCTGAATGTTAAACCTGGTAACA 93161 || || || ||||||| || || || ||| ||| || || | ||| || | | Sbjct 3408080 ACAGTGCAAGCCCTCGTCTC-TGCTAGTAAGTCAGTTGGAAAAGGTGAGACCAGGCATTA 3408138 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 ||| ||||||||||| | || || || |||||| ||| ||||| || || ||||||| Sbjct 3408139 TTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCA 3408198 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 ||| ||||| || | | |||||| || | | | || | | ||| | Sbjct 3408199 TGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCAAGCCAGCGCA 3408258 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341 | ||||| || || || ||||| || || || | || ||||| | | |||| || | | Sbjct 3408259 AGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTAAACAGAAACT 3408318 Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401 ||| || | || ||| | ||| || || || | ||| |||||||||||||||| Sbjct 3408319 CTCTTTCTTTGGAGTCTTTAACGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGGA 3408378 Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461 ||| ||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||| Sbjct 3408379 TATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTT 3408438 Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | ||||| ||| || ||||| || |||| ||| |||||| || ||||| |||| | Sbjct 3408439 GGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGCAAAGAAAGAGA 3408498 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCA-TCTTTA-AGCTTATCCCAAT-CGGATAGAT 93578 | ||| ||||||| | |||| || ||||| ||| ||||| | | || | | Sbjct 3408499 GGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCT--TCCCAGTGCTGA-ATGT 3408555 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| |||||||| | | || | |||||||| || ||||| ||||| || ||||| | Sbjct 3408556 CTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTTTCTTATACATCT 3408612 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 ||| || | || || | || ||||| || ||||| | || ||||| ||| Sbjct 3408613 GCCAAATATTGTGGTACTCGATAGGAAAGATCACAAAGC-ATCGGGGTTCTCT 3408664 >seq48 Length=20532749 Score = 123 bits (136), Expect = 3e-23 Identities = 314/469 (67%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | || |||| ||||| ||||| || || | |||| || | || || Sbjct 14858336 CCTGGCATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAAGAAC 14858277 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT 93270 | |||||||| ||||| || ||||| | || ||| || || || ||| || Sbjct 14858276 ACTCCTTCCACTGCTGCGAAGGCCACCTCCCTCTCCCTGAAA---GCAGACTTTCTGTCT 14858220 Query 93271 G--ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | ||||| || ||||| || ||||||||||||| | | | |||||| || | Sbjct 14858219 GCTATCCACCGCAAGGCCCAGTCTGCTTTTTTCTTAACATATTCCATTGTTTCAATTCCA 14858160 Query 93329 TTAAATAGGTAATCTCGCTCGTC-CGAA-TCTCGTATGTATGTATCGATTAACAGAGAAT 93386 ||||||| || || ||| || |||| |||| || ||||||| || | || || Sbjct 14858159 TTAAATA--AAAATTCCCTCTTCTCGAAGTCTC---TG-ATGTATCTATGAGCAAGCTAT 14858106 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 | | ||| | || || |||| || || ||||| |||||||| || | || ||| | Sbjct 14858105 ATGTCTCATAGTGAACGTTCTTGATGAGGATCTGGAAGCCGTAGAAGCAGCAAGGTTCAG 14858046 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || ||||||||| || || |||||| | ||||| ||| || || ||||| | Sbjct 14858045 GGACCTGCACTTCCTGGCTGAAGTGCTCTACCAAATTTTTATTTACAATTCCATCACTGG 14857986 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 ||||||||| || || || || ||||||| |||||||| ||| ||||| | || Sbjct 14857985 CTGCAAAAACGGCTAAGATGTGAGAGATAAAATACTTCTCATCGGGTTTGAGCTTGTTCC 14857926 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | | | ||||| ||||| || || || ||||| | |||||||| || Sbjct 14857925 AGTGAGGCAGATCCTTTGATAGGTCAACCTCTTCTGCTGTCCAAAAGGA 14857877 >seq127 Length=6698447 Score = 102 bits (112), Expect = 9e-17 Identities = 183/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||||||||||||||| || ||||| ||||||||||| || ||||||| ||||| Sbjct 1413981 TACATTTCAGAATGGAGGTTGTCCATGGCAATTTGGAAGCCAAAGAAACAGTGGGCTTCT 1414040 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || || || ||||| || ||||| ||| || || || ||| ||||||| ||| | Sbjct 1414041 GTAATTTGAACTTC-TGGCTAAATCGCTCCACCAGGTTCTCACTGACTATGTCATTGCTG 1414099 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA--TCTTTAAGCTTAT 93563 || ||| | |||||| | ||| |||||| | |||||||| ||| ||| | Sbjct 1414100 GCAGCAGAGCAAGCCAGGACATGTGAAATAAAA--TCTCTCATCAGGCCTTAGTGCT--T 1414155 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||| | | | ||||| | |||||| || || || | ||||||| || || || | Sbjct 1414156 CCCAGGC-CAAATGTCTTTGGCAAGATCCACCTCCTCAGCCCTCCAAAAGGAGGCCTCAG 1414214 Query 93624 CTTTTTTGTACATATCCCATAT 93645 |||| || | ||| | ||| || Sbjct 1414215 CTTTCTTATCCATCTGCCAAAT 1414236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||||||||||||||| || ||||| ||||||||||| || |||||||| | |||| Sbjct 1570668 TACATTTCAGAATGGAGGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGTGGGTTTCC 1570609 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | || || ||||| || ||||| || || || |||||| ||||| | || || Sbjct 1570608 ATAATTTGAACTTC-TGGCTAAATCACTACACCAGGTTTTCAGTGACTCTGCCCTCACTG 1570550 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || ||| | |||||| | ||| ||||||| ||| Sbjct 1570549 GCAGCAGAGCAAGCCAGGACATGTGAAATAAAATCTTT 1570512 >seq192 Length=2088204 Score = 100 bits (110), Expect = 3e-16 Identities = 193/281 (69%), Gaps = 14/281 (5%) Strand=Plus/Plus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||||||||||||||| || ||||| ||||||||||| || |||||| |||| Sbjct 1659881 TACATTTCAGAATGGAAGTTTTCCATGGCAATTTGGAAGCCATAGAAA-------CTTCT 1659933 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || || || ||||| || ||||||||| | || |||||| ||||||| ||||| Sbjct 1659934 GTAATTTGAACTTC-TGGCTAAATCTCTCCTCCAGGTTTTCAGTGACTATGCCATCTCTG 1659992 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA--TCTTTAAGCTTAT 93563 || ||| | |||||| | ||| |||||| | |||||||| ||| ||| | Sbjct 1659993 GCAGCAGAGCAAGCCAGGACATGTGAAATAAAA--TCTCTCATCAGGCCTTAGTGCT--T 1660048 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||| ||| ||||| | |||||| ||||| | | ||||||| || | || | Sbjct 1660049 CCCAGGGCCATATGTCTTTGGCAAGATCCACTTCCTTAGCCCTCCAAAAGGAGTCCTCGG 1660108 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 |||| || | ||| | || || | || || || || ||| Sbjct 1660109 CTTTCTTATCCATCTGCCGAATACCCTGGTACTGGATAGGA 1660149 Score = 93.3 bits (102), Expect = 5e-14 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||||||||||||||| || ||||| ||||||||||| | ||||||||| | ||||| Sbjct 319145 TACATTTCAGAATGGAGGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCAGGCTTCT 319204 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || || || || || || |||| ||| || || || ||| ||||||||||||| Sbjct 319205 GTAATTTGAAC-TCCTGGCTAAATTGCTCCACTAGGTTCTCACTGACTATACCATC 319259 >seq135 Length=5576972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||||||||||||||| || ||||| ||||||||||| || || ||| | ||||| Sbjct 5108973 TACATTTCAGAATGGAGGTTTTCCATGGCAATTTGGAAGCCATAAAAAGAGTGGGCTTCT 5108914 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || | || |||||| | ||| || ||| | ||| || || ||||||| |||| | Sbjct 5108913 GTAACTTGAACTTCTGGCTAAATTC-CTCCATGAGGTTCTCCCTGACTATGCCATTGCTG 5108855 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTA-AGCTTAT 93563 || ||| | |||||| | |||| ||||||| | ||| ||| ||||| ||| | Sbjct 5108854 GCAGCAGAGCAAGCCAGGACATGCCAAATAAAATCTCTCTTATCTGGCTTTAGTGCT--T 5108797 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||| | ||||| |||||||| | || || | |||||||| || || || | Sbjct 5108796 CCCAGGGCCCAATGTCTTTGGAAAGATCCATCTCCTCAGCCGTCCAAAAGGAGGCCTCGG 5108737 Query 93624 CTTTTTT 93630 |||| || Sbjct 5108736 CTTTCTT 5108730 >seq136 Length=5168023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| |||||||||||||| | || ||||| ||||||||| Sbjct 4987926 ATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 4987985 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || ||||| |||||||| ||||| ||| || Sbjct 4987986 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCAC 4988041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 ||||| |||||||||||||| || ||||| |||||| ||| ||||| || || |||||| Sbjct 4986705 AGTCCCCGTTTCTTGAGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCC 4986764 Query 93221 ACGGCTGCAAATGCCACAATACGTTC 93246 ||||| ||||| || || | ||| || Sbjct 4986765 ACGGCAGCAAAGGCGACCACACGCTC 4986790 >seq117 Length=6347111 Score = 86.0 bits (94), Expect = 7e-12 Identities = 192/279 (69%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 93368 GTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCG 93427 || ||||| | ||| |||||||||||||| | || |||| || |||||| | || Sbjct 1408443 GTGTCGATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCAGGGCCATTTGGTAACCA 1408384 Query 93428 TAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCA 93487 |||||||| ||||| || || || || ||||| |||| ||| || | ||| ||| Sbjct 1408383 TAGAAACAATGGGCTTCTGTCATTTGAACATCTTGGCTAAATTGCTCCACCAAATTCTCA 1408324 Query 93488 TTGACTATACCATCGGATGCTGCaa--aaaaaGCCAATATATGCTTTATAAAATGTTTCT 93545 |||||| | | ||| | || |||| | ||||||| ||||| |||||||| ||| Sbjct 1408323 TTGACTTTGCAATC-GCTG--GCAAGGAGAAAGCCAGAATATGTGAAATAAAATG--TCT 1408269 Query 93546 CATCA-TCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGAC 93603 | ||| ||||| | | ||||| | | | | ||||| | ||| || || || | Sbjct 1408268 CCTCAGGCTTTAGGGCT-TCCCAGTGCTGGGTG-TCTTTCAATTAATCCACCTCCTCAGC 1408211 Query 93604 AGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 |||||||| || || ||| ||| || ||||| | ||| Sbjct 1408210 TGTCCAAAAGGAAGCCCCTGGTTTCTTATACATCTGCCA 1408172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556831362945960