Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq40 122 7e-23 seq16 114 1e-20 seq12 102 7e-17 seq22 100 2e-16 seq148 96.9 3e-15 seq126 89.7 4e-13 seq3 87.8 2e-12 seq117 82.4 6e-11 >seq40 Length=22651954 Score = 122 bits (134), Expect = 7e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 7366710 AGATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGCCCA 7366651 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || || || || | Sbjct 7366650 GTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACC 7366591 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| |||||||||||||||||| | |||||| ||| || |||| || |||| Sbjct 7366590 AGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCTGACTACA 7366531 Query 22397 ACATTCA 22403 |||| || Sbjct 7366530 ACATCCA 7366524 >seq16 Length=31725842 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| |||||| | || || || || |||| || || || ||| || Sbjct 21647254 AAGATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 21647195 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || || || || ||||| || ||||| || ||| Sbjct 21647194 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 21647135 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| || || || | || ||| | || | || |||||| Sbjct 21647134 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTAC 21647075 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || |||||| | ||| | || ||| |||| || || ||| Sbjct 21647074 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGATTCCGTGGTGGT 21647024 >seq12 Length=34595640 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || | | | || || || || |||| || || ||||| || Sbjct 22518367 AGATGCAGATCTTCGTGAGGATCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCTCA 22518426 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | | || ||| | ||||| |||||||||||||| || || || || | Sbjct 22518427 GTGACACCATCAAGAATGTCAGAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACC 22518486 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| ||||||||||||| |||| | |||||| || || |||| || |||| Sbjct 22518487 AGCAGCGTCTGATATTTGCCGGCAGACAGCTGGAGGATGGCCAAACTCTCTCTGACTACA 22518546 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || | || ||||| || ||| | || |||| || || |||| || || Sbjct 22518547 ACGTCCAGAAAGAGTCTACCCTGCACCTAGTGTTTCGCCTGCGAGGTGG 22518595 >seq22 Length=29172479 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || | || || | || || || | |||| || || ||||| ||| Sbjct 11894573 AGATGCAGATCTTCCTGAAGACCCTGACGGGCAAGGCCATCACCCTCGAGGTGGAGCCCA 11894514 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || ||||| ||||| |||||||||||||| || || || || | Sbjct 11894513 GTGACACCACCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACC 11894454 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| |||||||||| ||||||| | |||||| | | | |||| || |||| Sbjct 11894453 AGCAGCGTCTGATATTTGCCGACAAACAGCTGGAGGATGGCAGACCTCTCTCTGACTACA 11894394 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| | ||||| |||||| Sbjct 11894393 ACATCTAGAAAGAGTCCACC 11894374 >seq148 Length=4887613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||||||||| || || || | || || || || |||| || ||||||||| Sbjct 4051006 GTCAAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAAGTGGAA 4050947 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| |||||| | || || | || || || || || || || || || || || Sbjct 4050946 CCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 4050887 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||||||| | || ||| |||||| | || || Sbjct 4050886 GACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTTCTGAC 4050827 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || ||||| || || Sbjct 4050826 TACAACATCCAGAAAGAGTCTAC 4050804 >seq126 Length=6421402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || |||| ||||| | ||| || Sbjct 2410041 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACCATCACACTTGAGGCTGAACCC 2409982 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || || || || ||||| || ||||| || ||| Sbjct 2409981 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2409922 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| || || || | || || || || | || |||||| Sbjct 2409921 CAGCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAACATGGACGTACTTTGTCGGATTAC 2409862 Query 22396 AACATTCAAAAAGAATCCACCATACAT 22422 ||||||||||| || |||| | | ||| Sbjct 2409861 AACATTCAAAAGGAGTCCATCCTTCAT 2409835 >seq3 Length=47073470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||| | || || || || || | || || || || |||| ||||| ||| | Sbjct 10446188 TGTAGAGATGTAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGAA 10446247 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| | ||| | || || | ||| ||||| ||||||||||| || || || | Sbjct 10446248 GCCCAGTAACACCATTGAGAATGTTAAAGCCAAAATCCAAGACAAGGACGGCATCCCCTC 10446307 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || |||| ||| |||||||| |||| || ||||| | ||||| |||| || Sbjct 10446308 TGACCAGCAACATCTGATATTTGCTAACAAAAAGACGGAGGACTGCAGCACCTTCTCTGA 10446367 Query 22392 TTACAACATTCAAAAAGAATCCA 22414 | |||||| || ||||| |||| Sbjct 10446368 CTTCAACATCCAGAAAGAGTCCA 10446390 >seq117 Length=6347111 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || | || || | || || || || ||||||| ||||||||| Sbjct 1553976 GTCAAAATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAA 1554035 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| |||||| | || || | || || || || || || || || || || || Sbjct 1554036 CCCAGTGATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 1554095 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||| | ||||| ||| | || ||| || ||| | || || Sbjct 1554096 GACCACCAGAGGCTCATCTTTACAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGAC 1554155 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 ||||||||||| || || ||||| Sbjct 1554156 TACAACATTCAGAAGGAGTCCAC 1554178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419706366825385