Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq371 255 2e-63 >seq371 Length=40469 Score = 255 bits (282), Expect = 2e-63 Identities = 324/441 (73%), Gaps = 16/441 (4%) Strand=Plus/Minus Query 13558 ATATTTGATAT-TTAGAGG--TGGCGCAAT-GAGTAAATACAATGCTAAGAAAGTTGAGT 13613 ||||||||| | ||| ||| ||||||| | ||||||||||||||| ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 13614 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGTGAATATTACCAATATTTAGAA---- 13669 | ||||| || || ||||||||||| || ||||| || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 13670 -AGTAAT-ATGAATGGCACTAATTATGATCATATCGAAATACAACCGAAATTCGAATTAT 13727 | |||| || |||| |||||| ||||||| |||||||||| || || || Sbjct 658 GATTAATTATAGATGG------TTATGACTATATCGAGATACAACCGAGATATGAGCTAA 605 Query 13728 TACCAAAACTAGATAAACAACGAAAGATTGAATATATTGCAGACTTCGCGTTATATCTCG 13787 |||| ||| | | ||||||||| || | |||||||||||||||||| || ||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 13788 ATGACAAACTGATTGAAGTTATCGACATTAAAGGTATGCCAACCGAAGTAGCAAAACTTA 13847 | ||||| |||||||||| || ||| ||||||| ||| | || ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 13848 AAGCTAAGATTTTCAGACATAAATACAGAAACATAAAACTCAATTGGATATGTAAAGCAC 13907 | || ||| | || ||| || ||| || ||||||| | ||||||||||||||||| Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 13908 CTAAGTACACAGGCAAAACATGGATTACTTACGAGGAATTAATTAAAGCAAGACGAGAAC 13967 ||||||||||||| ||| ||| | || || || ||||| | || | ||||| |||| Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 13968 GCAAAAGAGAAATGAAGTGAT 13988 |||| | || | || ||||| Sbjct 364 GCAAGAAAGCTAAGAGGTGAT 344 Score = 174 bits (192), Expect = 5e-39 Identities = 261/371 (70%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 30008 TATCATTGGTAAAATTAAAGATCATATCGGCGGTATGGTAGATGCTATTAAAAAAGGACT 30067 ||| |||| ||||||||| ||| || || ||||||||| | |||| ||||| Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 30068 TAATAAATTAATTGAAGGCTTAAACTGGGTCGGTGGTAAGTTAGGTATGGATGAAATACC 30127 || ||| | || ||||| | |||||||| | || || | || ||||| || |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 30128 TAG------GTTACACACTGGTACAGAGCACACACATACTACTACAAGATTAGTTAAGAA 30181 || ||||||||| ||||| || || || |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 30182 CGGTAAGATTGCACGTGATACATTCGCTACAGTTGGGGATAAAGGACGTGGAAATGGTCC 30241 |||||||||||| || |||||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 30242 AAATGGTTTTAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTAATCACACCTAA 30301 |||||| || ||||||||||| | || || |||||| || |||||||||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 30302 TACAGACACTACTGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGTGCACAAACTTA 30361 | ||| || || || ||| | || |||| || | || ||||| || || || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 30362 TTCAATGTTAA 30372 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 10325 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATTTGCGGAAAGCCTCACGCTG 10384 |||| ||||| |||||| ||||| | || || || || || || |||| | || | Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 10385 ACCTAGCACATTACGAAGCAGTAGGTAGAGGCATGAACAGAAACAAGATGAATCACTACG 10444 | ||||||||||| ||||||||||| | || |||||| |||||| | || | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 10445 ACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCAATTGGTGTTA 10504 |||| | ||||||| ||||| | ||||| || |||||||| | || || | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 10505 AGTCGTTT-GATGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 10563 | | |||| || | || ||||| || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 10564 AATAAAATGTTGAAAGGAGAGAAA 10587 || |||||| ||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 30469 GTAAAGGTACAAAGTGGCTTGGCGATAAAGTTGGTGATGTCATGGACTTTATCGATAATC 30528 ||||||||| | | |||||||||||||| ||||| ||||| | || | || ||||| | Sbjct 28067 GTAAAGGTAAAGACTGGCTTGGCGATAAGGTTGGAGATGTGCTTGATTGGATAGATAAAC 28008 Query 30529 CAGGCAAACTTTTAAATTATGTACTTCAAGCGTTTGGAGT 30568 | || ||| | |||||| | ||| | ||||||||||||| Sbjct 28007 CGGGTAAATTGTTAAATAAGGTATTAGAAGCGTTTGGAGT 27968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143413597497062